Glycine max (soybean): 100776979
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Entry
100776979 CDS
T01710
Name
(RefSeq) uncharacterized protein LOC100776979 isoform X1
KO
K06100
symplekin
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100776979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100776979
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100776979
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100776979
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100776979
U7-dependent histone pre-mRNA processing factors
100776979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
CRM1_C
Motif
Other DBs
NCBI-GeneID:
100776979
NCBI-ProteinID:
XP_006573374
LinkDB
All DBs
Position
1:complement(42895918..42916384)
Genome browser
AA seq
1361 aa
AA seq
DB search
MVGKTMCMAATSREKLTSLVNAAKLAIDIPSKLESLRQLRHELPPEDPVLLTEFLPSLFL
FHSDRFGPVRKFLTEMLGEIGLKNTEFLSDIVPVLIDLLDDDTPAVVRQALLCGIDLFRA
TLEKIAVQGLYSSDLDGALESAWAWMLKFKDKVYSIAFQHGSGGAKLLALKFVEAVICLY
THDPNGSSEPTSHQGRPVEFNISWLGRGHPVLNIGDLSIEASHRLGLLLDLLRFPTVKSL
GNSVIIVLIKSLSAIAIDRPAFYGRILPVLLSLEPSSSVVNGVSVSATHFALKNAFLTCS
KCTHPSAAPWRDRLAGALKELQSEGKADQVFHLISASNGTIEREKDVQPVIKEEEPATNS
GDSVQNTLARKRSGSQIGGDLSEDEETPGKRVRTTIVALEEPKKELDVCTTAYSQDEAPS
KGVVDNGPVRQLVATFGALIAQGEKAVGHLEILISSISADLLAEVVMANMQNLPTYYPNA
EGNDEQLQDISMIGSDDKAKYPASFVAAVMSLSSTFPPIASLLDAHQSVSKEVKSQVEEE
IAETATNIGPVHSGMNIESENIPSPPDFPSSDASIPGVENGCTTVPPDPDIHDVGNSESG
IPGLDSFGRSDAVSQTFAPSLLVSTEICQEDGSQEQDTSLDQRSPLNLAPSISTDRSEEL
SPKAAVRDANSLVSSTATSVVPPRLVLPKMIAPVVDLEDEQKDRLQQSCFMRIIDAYKQI
AVAGGSNVRFSILAYLGVEFPLDLDPWKLLQKHILIDYTGHEGHELTLRVLYRLFGEAEE
EPDFFSSTTAASVYEKFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSP
GNGDKGEKELHSLNADRVTQGLSTVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKAIR
LVANKLYPLSSISKQIEDFSKEMLFSVMSGDATEATDVEGSFADSQKGPDVEKVPNEQSS
LSGSTKDVPSDNRQSCTSESVSPDSVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTSKA
VKQAVRCQIPILVRTMGSSSDLLEIISDPPNGSENLLMQVLQTLTDGTVPSKDLICTVKR
LHDSKLKDAEVLIPILPFLSHDEVMPIFPHIVNLPLEKFQAALGRILQGSSQSGPVLTPA
EVLIAIHGIDPEKDGIPLKKVTDACNACFEQWQTFTQEVLARVLNQLVEQIPPPLLFMRT
VLQAIGAFPTLVDFIMGILSRLVMKQIWKYPKLWVGFLKCVQLTKPQSFGILLQLPPAQL
ENTLNRIAALKAPLIAHASQPDIQSKLPRAMLVVLGLASDSQVLSQAQTTQTQTSQTQTS
QTQTTQTQTSQTQTSQTQTGETSNSDKDTATEKSKESSTAS
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggtcggaaaaacaatgtgcatggcggcgacttcccgtgaaaagctcacgagtctcgtg
aacgccgccaagctggccatcgacatcccctccaagctcgaatcgctgcgccaactccgc
cacgaacttccccccgaagaccccgtcctcctcaccgagttcctcccatcgctcttcctc
ttccactccgatcgcttcggccccgttcgcaaattcctcaccgagatgcttggggagatt
ggattgaagaacacagagttcttgtccgacattgtgcctgtgctgattgatttattggat
gatgacacgccggcggttgttcgtcaagctctactgtgcggaattgacttgtttcgtgcc
acacttgagaaaattgcggttcagggtctatattctagtgatttagacggcgcacttgaa
tccgcttgggcatggatgcttaaattcaaagacaaagtatactcaatagcttttcaacat
ggaagtggtggtgcaaagctgctggctctgaagtttgttgaggcagttatttgtctttac
acgcatgatcccaatggttcctcagagcccacttctcatcaaggaaggcctgtggaattt
aatatatcatggctcgggcggggtcatcctgtacttaacattggagatttgtcaattgaa
gccagccatcgtttgggtctcttgcttgatctactcagatttccaactgtgaagtctctt
ggtaactcagtaatcattgtgctgattaaaagtctttcagccattgcaattgacaggcct
gcattctatggccgcatcttgccagttttgctgagtttggaaccttccagctctgttgtt
aatggggtctctgtatcagctacacattttgctttgaagaatgcctttcttacttgctcg
aaatgtacacatccaagtgctgctccgtggagagatcgtttggcaggggccttgaaggaa
ttgcagtcagaaggaaaggcagatcaggtgttccacctaatctctgctagcaatggaacc
atagagagagagaaagatgttcaacctgttatcaaggaagaggaacctgcaacaaattct
ggcgattcagtgcagaatactttggcaagaaaacgatcaggatcacaaattggaggtgat
ttatctgaagatgaagaaactcctggaaaacgtgtcaggacaacaattgttgctttggaa
gaacctaagaaggagttagatgtatgtaccactgcctactctcaggatgaggctccttca
aaaggagttgtggataatgggcctgtacggcaacttgttgccacatttggtgctttgatt
gctcaaggtgaaaaagctgttggacatttggaaattctcatctcaagtatttctgctgac
ttgttagctgaggtggtgatggcaaatatgcaaaacctacctacgtattaccctaatgct
gaaggaaatgatgaacagctgcaagacattagtatgattggttctgatgacaaggctaaa
tatccagcatcatttgttgctgctgttatgtcactttctagtactttcccgccaatagct
tcccttcttgatgcacatcaatcagtgtccaaagaggtaaagtcacaagtggaggaagaa
attgctgaaactgctacaaatattggtcctgtgcattctggcatgaatattgagtctgaa
aatataccatcgcctcctgattttccatcttctgatgccagtatacctggagtagagaat
ggctgcacaactgtgcctcctgatcctgacatccatgatgttggaaactcagagagtgga
atccctggcctggattcttttggtcgtagtgatgctgtgtcacaaacttttgctccttcc
ttattggtttccactgaaatatgccaagaagatggcagtcaagagcaagatacaagtttg
gatcagaggtcacctctgaacttagctccatcaatatcaacagatagatctgaggagctg
agcccaaaagcggctgttagagatgccaatagcttggtgtcctcaacagctacttcagtt
gtgcctccccgattagtcttgccaaagatgattgctcctgttgttgaccttgaagatgaa
caaaaggatcgtttgcaacagtcatgttttatgcgtattattgatgcatataagcaaata
gctgtagctggaggctccaacgttcgtttttcgatacttgcttatttaggagttgagttt
cccttggatttagacccatggaaactattacagaagcatattttgattgattacactggt
catgagggacatgagttgacattgcgtgtcctctacagattatttggtgaggctgaagag
gagcctgacttcttttcttccacaactgcagcttctgtatatgaaaaattcctacttaca
gtggcagaagcacttagagattcctttccaccttcagataaatcattaagtaaattgctt
ggtgaatctccttatttaccaaaatcagttctgaaaattttagaaaatatgtgttctcct
ggaaatggggataaaggtgaaaaggagttgcactcactgaatgcggatagagttactcaa
ggtctaagtactgtatggagtttgattcttctaaggcctcccattcgagatacttgctta
caaattgctctacagagtgcagtgcatcacctggaagaagtgcgtatgaaggcgatacgt
ctggtggcaaataagctttatcctctgtcatccatttctaagcaaatagaagatttttca
aaggaaatgcttttctccgtgatgagtggcgatgcaactgaagctactgatgttgaaggt
tcctttgctgattcacaaaagggacctgatgttgaaaaggttccaaacgaacaatcatca
ttgagtggcagtactaaagatgtcccctcagataatcgtcaatcatgcacatctgagagt
gtttctccagattcagtttctgaggctcagaggtgcatgtcattgtattttgctttgtgt
acaaagaaacattctctctttcgccaaatatttgtcatctatagaagcacatcaaaggca
gtgaagcaggcagtacgttgccaaattccaatactagtacgtactatgggctcatcttca
gatctacttgaaattatttcagatcccccaaatggaagcgagaatcttctaatgcaggta
ttgcaaacacttacagatggtacggtcccttctaaggatttaatatgtaccgtgaaaagg
ttgcatgattcaaaactcaaggatgcagaggttcttattccgatattaccattcctatcg
catgatgaggtaatgcccatttttcctcacattgtgaatcttcctttggagaagttccaa
gcagcacttgggcgcatattacagggatcatcacaatctggtccagtgcttactccggct
gaagttttaattgcaattcatggaattgatcctgaaaaggatggaattcccttgaaaaag
gtcacagacgcatgcaatgcttgctttgagcagtggcaaacttttactcaagaagttctt
gctagagtattgaatcagttggttgagcagattcctcctcctttactgttcatgcgtaca
gtattacaagcaattggtgcttttccgacactggtggactttataatggggattctttct
cgccttgtgatgaagcagatatggaaatacccaaagttatgggtgggattcttgaagtgt
gtgcagttgacaaaaccacagtcatttggcattttgcttcagctgcctccagcacaattg
gaaaatacattaaatagaattgcagccttgaaggcaccattgattgcgcatgcaagccag
ccagatatacaatctaaacttccaagggctatgctggttgttctgggacttgcttccgat
tctcaggttttaagtcaagcacaaactactcagacacaaactagtcagacacagactagt
caaacacagactactcagacacaaactagtcagacacaaactagtcagacacagactggt
gagacaagcaattcagacaaggacacagcgacagaaaaatctaaagaatcatctacagcg
agctaa
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