KEGG   Gordonia sp. KTR9: KTR9_2379
Entry
KTR9_2379         CDS       T02216                                 
Name
(GenBank) Superfamily II RNA helicase
  KO
K03727  ATP-dependent RNA helicase HelY [EC:3.6.4.-]
Organism
gor  Gordonia sp. KTR9
Brite
KEGG Orthology (KO) [BR:gor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gor03019]
    KTR9_2379
Messenger RNA biogenesis [BR:gor03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     KTR9_2379
SSDB
Motif
Pfam: DSHCT DEAD ResIII Helicase_C MTR4-like_stalk
Other DBs
NCBI-ProteinID: AFR49016
UniProt: J9S3A4
LinkDB
Position
2707752..2710466
AA seq 904 aa
MLVCAPTGAGKTIVGEFAVHLALAGGTKCFYTTPIKALSNQKYNDLVAVHGAESVGLLTG
DSSINPDAPVVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLE
PSVRVVSLSATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRLFDLFDPADT
GPARKAGTRPRVNPELKRQIRHRILMADDERESSRGRGRGRGSGPRRDGRGPALSRPNLV
TRLDREGLLPAIGFIFSRVGCDAALAQCLRSGISLLTPAEIGEVDAIVDRHLTELSPTDL
DVLGVHEWREGLRRGLASHHAGMLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSV
VLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGART
FPLRSSFSPEYNMAVNLLGRLGLDGARELLHRSFAQFQADRSVVGQARKLDEAQRALRKL
DGELARTAQARGLEPAEAEADSEEEPYAGFLGYVTLREDIRSRERDLKFRRRTDTHDAIT
ADLAALKRGHVIGVPVGRHRGLAVIIEPATQAQDPKPLVLTEDAWCGRVGTRDFVNPPEV
LGNMRLPKNADRRTGRGRRDLASALRSTGIEMPRGRQKKRADAADDTELARLRRTLRAHP
AHQLPNGDELFRLAERRNRLLRDIVNAERSIGDRTSTLGVTFDHIVGVLSELGYLERVAE
STESTGHTMLVTDSGKLLGRIYSESDLVVTECIRAGVWDDLSAPDLAAVVAALVYESRRD
SYSGVDALPGSSSMRAAMAATVGIWSRVTAVEQRHRVSPTREPDTGFSVAVATWASGRSL
GEALLLAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGSDTRLGGTARAAVKAIRRGVVA
AELG
NT seq 2715 nt   +upstreamnt  +downstreamnt
gtgctggtgtgcgcgccgaccggcgcgggcaagaccatcgtgggtgagttcgccgtgcat
ctggcgctggccggtggcacgaagtgcttctacaccacgccgatcaaggcgctcagcaat
cagaagtacaacgacctggtggcggtccacggggccgagtcggtcgggttgctgaccggc
gacagctcgatcaaccccgatgcgcccgtcgtcgtgatgacgaccgaggtcgtgcgcaac
atgatctacgccgagtcacgagctctcgacgggttgtcgcacgtcgtgatggacgaagtc
cacttcctggccgaccggttccgcggggcggtgtgggaagaggtgatcctgcacctcgaa
ccatcggttcgggtggtaagcctgtcggcgacggtgagcaacgccgaggagttcggcgac
tggattcagacggttcgtggcgacacctcggtgatcgtggacgagcaccggccggtgccg
ctgtcccagcacatgctcgtcgggcagcggttgttcgacctgttcgaccccgccgacacc
ggtccggcacgcaaggccggtacccggccccgggtcaatccggagctgaaacgccagatc
cggcaccggatcctgatggccgacgacgagcgggagtcgtcgcgcggccgtggacgaggt
cgcggcagcggaccccggcgtgacggacggggaccggcgctgtcccggccgaatctcgtc
acgcgtctcgaccgggagggcctgctcccggccatcggcttcatcttctcgcgcgtcgga
tgcgacgccgccctggcgcagtgtctgcggtcgggtatctcgctcctcacccccgcggag
atcggcgaggtcgacgcgatcgtcgaccgccatctcaccgaactgtcgccgaccgacctc
gatgtgctgggtgtgcacgaatggcgagaggggttgcgccgggggctggcctcgcaccac
gcgggcatgctcccgacgttccggcacaccgtcgaagagctgttcgtgcggggcctggtg
cggatggtgttcgccaccgagacgctcgcgctcggcatcaacatgcccgcgcgctcggtg
gtcctcgaacgtctggtcaagtacaacggtgaagcccatgtcgatctgacccccggcgag
ttcacgcagctgaccgggcgggcgggtcgccgcgggatcgacgtcgagggccacgcggtc
gtcgtgtggacacccgaggttgtcccggaggaggtggccggcctcgccggcgcgcgtacc
ttcccgctgcgcagctcgttctcgccggagtacaacatggcggtcaacctcctcggacgg
ctgggcctcgacggcgcccgcgagctgctgcatcggtcgttcgcgcagttccaggccgac
cggtcggtcgtcgggcaggcgcgcaaactggacgaggcccagcgggcgctgcgcaaactc
gacggcgagctggcgcgcacggcgcaggcgcgggggctggaacctgctgaggccgaagcc
gattcggaagaagagccctatgccggctttctcggttacgtcacgctgcgcgaggacatc
cgcagccgcgaacgcgatctcaagttccgcaggcgcaccgacacgcacgacgccatcacc
gcggacctggccgcgctcaaacgcgggcatgtcatcggcgtacccgtcggacggcaccgc
ggtctggcggtcatcatcgaaccggccacgcaggcgcaggatcccaagccgctcgtactg
accgaggacgcctggtgcggtcgcgtcggtacccgcgacttcgtcaatccgcccgaggtg
ctgggcaacatgcgactgccgaagaacgccgaccgtcgcaccggtcgcggccgacgcgat
ctggcgtcggcgttgcgatcgaccggcatcgagatgccgcgcggacggcagaagaagcgc
gccgacgccgccgacgacaccgagctcgcgcgccttcgacgcaccctgcgtgcgcatccg
gcgcatcagttgccgaacggtgatgagttgttccggctcgccgaacgccgcaaccggttg
ttgcgcgacatcgtcaacgccgagcgcagcatcggggaccggacgtcgaccctcggcgtc
acgttcgatcacatcgtcggtgtcctcagcgagttgggctatctcgagcgcgtcgccgaa
tcgaccgagtccaccggccacacgatgctggttaccgactcgggcaagctgctcggccgc
atctacagcgagagcgacctggtggtgaccgagtgcatccgggcaggcgtctgggacgat
ctctccgcgcccgatctcgccgcggtggtcgccgcactggtctacgagagccggcgcgac
agttacagcggagtcgatgctcttccgggcagcagctcgatgcgcgccgcgatggcggcg
acggtcgggatctggtcgcgggtcaccgcggtggagcagcggcatcgggtgagcccgaca
cgcgaaccagacaccggattctctgtcgccgtggcgacgtgggcatcgggccgttcgctc
ggcgaggccctgctcctggcaggcgaacgcggacaactgctctcgccgggggacttcgtg
cggtggaaccggcaggtcgtggatcttctcgaacagatccggctcggcgtggggtccgac
acccgtctcggtgggacggcccgggcggcggtcaaggcgatccgtcgcggggtggtcgct
gccgaactcggctga

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