Gordonia sp. KTR9: KTR9_2379
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Entry
KTR9_2379 CDS
T02216
Name
(GenBank) Superfamily II RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:3.6.4.-]
Organism
gor
Gordonia sp. KTR9
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gor03019
]
KTR9_2379
Messenger RNA biogenesis [BR:
gor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KTR9_2379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
AFR49016
UniProt:
J9S3A4
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All DBs
Position
2707752..2710466
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AA seq
904 aa
AA seq
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MLVCAPTGAGKTIVGEFAVHLALAGGTKCFYTTPIKALSNQKYNDLVAVHGAESVGLLTG
DSSINPDAPVVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLE
PSVRVVSLSATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRLFDLFDPADT
GPARKAGTRPRVNPELKRQIRHRILMADDERESSRGRGRGRGSGPRRDGRGPALSRPNLV
TRLDREGLLPAIGFIFSRVGCDAALAQCLRSGISLLTPAEIGEVDAIVDRHLTELSPTDL
DVLGVHEWREGLRRGLASHHAGMLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSV
VLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGART
FPLRSSFSPEYNMAVNLLGRLGLDGARELLHRSFAQFQADRSVVGQARKLDEAQRALRKL
DGELARTAQARGLEPAEAEADSEEEPYAGFLGYVTLREDIRSRERDLKFRRRTDTHDAIT
ADLAALKRGHVIGVPVGRHRGLAVIIEPATQAQDPKPLVLTEDAWCGRVGTRDFVNPPEV
LGNMRLPKNADRRTGRGRRDLASALRSTGIEMPRGRQKKRADAADDTELARLRRTLRAHP
AHQLPNGDELFRLAERRNRLLRDIVNAERSIGDRTSTLGVTFDHIVGVLSELGYLERVAE
STESTGHTMLVTDSGKLLGRIYSESDLVVTECIRAGVWDDLSAPDLAAVVAALVYESRRD
SYSGVDALPGSSSMRAAMAATVGIWSRVTAVEQRHRVSPTREPDTGFSVAVATWASGRSL
GEALLLAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGSDTRLGGTARAAVKAIRRGVVA
AELG
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtgtgcgcgccgaccggcgcgggcaagaccatcgtgggtgagttcgccgtgcat
ctggcgctggccggtggcacgaagtgcttctacaccacgccgatcaaggcgctcagcaat
cagaagtacaacgacctggtggcggtccacggggccgagtcggtcgggttgctgaccggc
gacagctcgatcaaccccgatgcgcccgtcgtcgtgatgacgaccgaggtcgtgcgcaac
atgatctacgccgagtcacgagctctcgacgggttgtcgcacgtcgtgatggacgaagtc
cacttcctggccgaccggttccgcggggcggtgtgggaagaggtgatcctgcacctcgaa
ccatcggttcgggtggtaagcctgtcggcgacggtgagcaacgccgaggagttcggcgac
tggattcagacggttcgtggcgacacctcggtgatcgtggacgagcaccggccggtgccg
ctgtcccagcacatgctcgtcgggcagcggttgttcgacctgttcgaccccgccgacacc
ggtccggcacgcaaggccggtacccggccccgggtcaatccggagctgaaacgccagatc
cggcaccggatcctgatggccgacgacgagcgggagtcgtcgcgcggccgtggacgaggt
cgcggcagcggaccccggcgtgacggacggggaccggcgctgtcccggccgaatctcgtc
acgcgtctcgaccgggagggcctgctcccggccatcggcttcatcttctcgcgcgtcgga
tgcgacgccgccctggcgcagtgtctgcggtcgggtatctcgctcctcacccccgcggag
atcggcgaggtcgacgcgatcgtcgaccgccatctcaccgaactgtcgccgaccgacctc
gatgtgctgggtgtgcacgaatggcgagaggggttgcgccgggggctggcctcgcaccac
gcgggcatgctcccgacgttccggcacaccgtcgaagagctgttcgtgcggggcctggtg
cggatggtgttcgccaccgagacgctcgcgctcggcatcaacatgcccgcgcgctcggtg
gtcctcgaacgtctggtcaagtacaacggtgaagcccatgtcgatctgacccccggcgag
ttcacgcagctgaccgggcgggcgggtcgccgcgggatcgacgtcgagggccacgcggtc
gtcgtgtggacacccgaggttgtcccggaggaggtggccggcctcgccggcgcgcgtacc
ttcccgctgcgcagctcgttctcgccggagtacaacatggcggtcaacctcctcggacgg
ctgggcctcgacggcgcccgcgagctgctgcatcggtcgttcgcgcagttccaggccgac
cggtcggtcgtcgggcaggcgcgcaaactggacgaggcccagcgggcgctgcgcaaactc
gacggcgagctggcgcgcacggcgcaggcgcgggggctggaacctgctgaggccgaagcc
gattcggaagaagagccctatgccggctttctcggttacgtcacgctgcgcgaggacatc
cgcagccgcgaacgcgatctcaagttccgcaggcgcaccgacacgcacgacgccatcacc
gcggacctggccgcgctcaaacgcgggcatgtcatcggcgtacccgtcggacggcaccgc
ggtctggcggtcatcatcgaaccggccacgcaggcgcaggatcccaagccgctcgtactg
accgaggacgcctggtgcggtcgcgtcggtacccgcgacttcgtcaatccgcccgaggtg
ctgggcaacatgcgactgccgaagaacgccgaccgtcgcaccggtcgcggccgacgcgat
ctggcgtcggcgttgcgatcgaccggcatcgagatgccgcgcggacggcagaagaagcgc
gccgacgccgccgacgacaccgagctcgcgcgccttcgacgcaccctgcgtgcgcatccg
gcgcatcagttgccgaacggtgatgagttgttccggctcgccgaacgccgcaaccggttg
ttgcgcgacatcgtcaacgccgagcgcagcatcggggaccggacgtcgaccctcggcgtc
acgttcgatcacatcgtcggtgtcctcagcgagttgggctatctcgagcgcgtcgccgaa
tcgaccgagtccaccggccacacgatgctggttaccgactcgggcaagctgctcggccgc
atctacagcgagagcgacctggtggtgaccgagtgcatccgggcaggcgtctgggacgat
ctctccgcgcccgatctcgccgcggtggtcgccgcactggtctacgagagccggcgcgac
agttacagcggagtcgatgctcttccgggcagcagctcgatgcgcgccgcgatggcggcg
acggtcgggatctggtcgcgggtcaccgcggtggagcagcggcatcgggtgagcccgaca
cgcgaaccagacaccggattctctgtcgccgtggcgacgtgggcatcgggccgttcgctc
ggcgaggccctgctcctggcaggcgaacgcggacaactgctctcgccgggggacttcgtg
cggtggaaccggcaggtcgtggatcttctcgaacagatccggctcggcgtggggtccgac
acccgtctcggtgggacggcccgggcggcggtcaaggcgatccgtcgcggggtggtcgct
gccgaactcggctga
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