Gamma proteobacterium HdN1: HDN1F_08690
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Entry
HDN1F_08690 CDS
T01300
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_08690 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_08690 (pnp)
03016 Transfer RNA biogenesis [BR:
gpb03016
]
HDN1F_08690 (pnp)
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HDN1F_08690 (pnp)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HDN1F_08690 (pnp)
Transfer RNA biogenesis [BR:
gpb03016
]
Prokaryotic type
tRNA degradation factors
HDN1F_08690 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_2
KH_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
CBL44452
UniProt:
E1VI10
LinkDB
All DBs
Position
1066393..1068498
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AA seq
701 aa
AA seq
DB search
MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT
VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST
DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA
GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV
GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIKAQAVSDLAVEGQSEITKEEVSRLLGD
LEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSM
RDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPENS
AFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAK
VIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIEDTGVVRIYG
ENGGSADAALARVLAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLVHISQIAEERV
AKVTDYLQEGQEVQVKVLDIDNRGRVKLSIKEAKADAGAKA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgtggttaagaaagaatttcggtttggtgaccaaacctacacgctcgaaacc
ggcaaaattgcgcgccaagcgacaggtgcggtcctcgtgtccaccgctcaagtggcggtg
ttggtcactgtcgttggaaagaagaaagcagatccaagcaaagactttttccctttaacg
gtgaattaccaagaaaagacctatgcatctgggcgcattcccggtggttattttaagcgc
gaaggcaagccctctgaaaaagaaacccttactagccgcttgattgaccgcccactacgg
ccgctgtttccggaaggctttcgcaatgaggtacagattattgcgaccgttttatcaacg
gataagaaaactgatccggatattgccgcactcgtgggtgcatctgctgcgctagcaatt
tctggtatcccttttaacggccctattggcgctgcgcgagtaggctttgttgatgggtct
tatgtgctgaacccttgctacgcagcgttagaaaaatcctctctggatctcgtcgtggca
gggacggatcaagcggttctgatggtggagtcggaagctaaggagctcaccgaagatcaa
atgcttggtgcggtgctctacggccaccaagaaatgcaggttgccattgaagcgatcaac
gcattcgctaaagaggttggcacgccacgttgggagtggcaggcggaagaggaaaacgtt
gggcttaaagcgcggattcgtgatgggtacgaggcgcagctacgccaagcctataccatc
accgaaaagcaagcacgctatgagcaagtgggtgcaattaaggcgcaagcggtaagtgat
ttggcggttgaaggacaatcggaaatcaccaaagaagaagttagccgcttgctgggtgac
ttggaatactacgttgtgcgcgacaacattctttctgcgcatccgcggattgacggccgc
gacaacaagacggttcgcccgatttcgatcgaagtaggcaaccttgccagaacgcacgga
tctgccttgtttacacgcggtgaaacgcaagcgattgtgaccgcaacgcttggaagtatg
cgtgactctcaaactgtggattacctagaaggagcgcgctccgagccgttcatgctgcac
tacaacttccctccgttctgcgttggggagacaggcggccaacttgggccgaagcgccgt
gagatcggccatggtcgtcttgcgcgccgtggtattcaggcggtgttgccggaaaactct
gcattcccctacgcaattcgcgtggtatctgagatcacggaatccaacggctcgtcttcc
atggcttccgtttgcggaagcagccttgccttaatggatgcgggtgtaccactgaaggcg
cccgttgcaggcatcgcaatgggcttggtgaaggagggcgatcgatttgcagtgctcacc
gacatcctcggagatgaagatcatcttggtgatatggatttcaaagtcgctggtaccgca
aaaggcgtgacggcgctgcaaatggacatcaagattgatggcatcaccgaagaaatcatg
gaagtggcgcttaatcaggcgcgcgatggtcgcctccatatccttggcgaaatggcaaaa
gtcatcgaagcgtcgcgccccgcgctttctcgcgatgcgcccgtataccttacgaccaag
attgatcccgataaaattcgcgatgtaatcggtaaaggtggcgctaccatccgccagatt
tgtgaagaaacctccgcaacgattgatatcgaagatactggcgtcgtgcggatttacggt
gagaatggcggctcagcagatgcggcgctggcgcgggtattggcaattacgacagaaccg
gaaattggccagatctataccggtaaagttgcgcgcatcgttgattttggtgcgtttgta
acctttatgccgggtcaggatggacttgtgcatatctcgcaaattgcggaggagcgtgtc
gccaaagtaacggattatttgcaggaagggcaggaagtccaagtgaaagtcttggatatc
gacaaccgcggtcgtgtgaagttgagcatcaaagaagcaaaagcagatgctggtgcgaaa
gcgtaa
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