Gordonia polyisoprenivorans: GPOL_c30350
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Entry
GPOL_c30350 CDS
T01719
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03030
DNA replication
gpo03410
Base excision repair
gpo03420
Nucleotide excision repair
gpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GPOL_c30350 (ligA)
03410 Base excision repair
GPOL_c30350 (ligA)
03420 Nucleotide excision repair
GPOL_c30350 (ligA)
03430 Mismatch repair
GPOL_c30350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpo03032
]
GPOL_c30350 (ligA)
03400 DNA repair and recombination proteins [BR:
gpo03400
]
GPOL_c30350 (ligA)
Enzymes [BR:
gpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GPOL_c30350 (ligA)
DNA replication proteins [BR:
gpo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GPOL_c30350 (ligA)
DNA repair and recombination proteins [BR:
gpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GPOL_c30350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GPOL_c30350 (ligA)
MMR (mismatch excision repair)
DNA ligase
GPOL_c30350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GPOL_c30350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AFA74050
UniProt:
H6MVF6
LinkDB
All DBs
Position
complement(3436110..3438191)
Genome browser
AA seq
693 aa
AA seq
DB search
MAEADQVANDGPSADVREQWSTLAEEIREHQFRYYVKDAPIISDGEFDRLLRRLQELEEA
HPELATADSPTKLVGGGFSTAFTPVDHLERMLSLDNVFDADEMRAWVARVADEVGSGTEY
LCELKIDGVALALVYRDGVLDHATTRGDGRTGEDVTLNARTITDVPQRLTASDEYPIPHV
LEVRGEVFFRVEDFETLNASLVADGKPPFANPRNSAAGSLRQKNPQITARRRLRMICHGI
GHTEGWRPASLHDAYLALGAWGLPVSSHTTKLVGAEAILEKIAYWGEHRHDVEHEIDGIV
VKVDDVTLQRRLGATSRAPRWAIAYKYPPEEVTTELLGIEVNVGRTGRVTPFAVLAPVLV
AGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSEYAFEMPDTC
PECGSVLRPEKDSDADIRCPNARSCPAQLRERLFHLAGRSSFDIEALGYEAAGALLSAGV
ITDEGDLFSLNADDLAKTALFTTKKGTLSANGTRLLANLDKAKEVPLWRVLVGLSIRHVG
PPTARALATEFGSLQAIEDADPERLAAVEGVGPTLAQSIHDWFTVDWHREIVEKWRAAGV
SMEDERDESIERTLEGKTIVVTGSLQDFSRDGAKEAILVRGGKASGSVSKKTDFVVVGDS
PGSKADKAEQLGVPILDEDGFKHLLETGEPAPN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaagcagatcaggtggcaaacgacggtccgtccgccgacgtgcgagaacagtgg
tcgacgttggccgaggagatccgtgaacatcagttccggtactacgtcaaagacgcaccg
atcatctccgacggcgagttcgaccggctgttgcggcgtctgcaggaactcgaggaggcg
catccggagctggccactgccgactcgccgaccaagctcgtcggcggaggtttctccacc
gcgttcacgcccgtcgaccatcttgagcgaatgttgtcgctggacaacgtcttcgacgcc
gacgagatgcgagcgtgggtcgcccgggtggccgacgaggtgggctctggaaccgagtac
ctgtgcgagctcaagatcgacggggtcgcgctggcgttggtgtaccgcgacggcgtgctc
gatcacgccaccacccgcggtgacggtcgcaccggcgaagacgtcaccctcaacgcgcgc
accatcaccgatgtcccgcaacgcctgaccgcctccgacgagtacccgataccgcacgtc
ctcgaagtacgcggtgaggtcttcttccgagtggaggacttcgagactctcaacgcctcg
ttggtggccgacggtaagccgccgttcgcgaatccgcgcaattccgcagcgggttcgctg
cgacagaagaatccccagatcaccgcgcgacgtcggctgcggatgatctgccacggcatc
ggccacaccgaaggatggcgcccggcgtcactgcacgacgcctacctcgcgctcggtgcc
tgggggctgccggtgtcctcgcacaccaccaaactcgttggcgcagaggcgattctcgaa
aagatcgcctactggggtgagcaccgccacgatgtcgagcacgagatcgacggcatcgtc
gtcaaggtcgacgacgtcacgctgcaacgccgactcggtgccacctcgcgcgcaccccgc
tgggcgatcgcctacaagtacccgcccgaggaggtcaccaccgaactgctcggcatcgag
gtcaatgtcggacgcaccggccgggtcaccccgttcgcggtgctcgcgccggtgctcgtc
gccggttccaccgtgtcacgggccaccttgcacaacgggtcggaggtcaagcgtaagggc
gtgctcatcggcgacacggtcaccatccgcaaggccggtgacgtgatccccgaggtcctc
ggtcccgtcgtcgacctgcgtgacggcagcgagtacgccttcgagatgcccgacacatgt
cccgagtgcggttcggtgctgcggccggagaaggacagcgacgccgacatccgttgtccc
aacgcgcggtcgtgcccggcgcagctgcgtgagcgactgtttcacctcgccggacgcagt
tccttcgacatcgaggccctcgggtacgaggcggccggcgcgttgctgagtgccggggtg
atcaccgatgagggagacctgttctcgctcaacgcagatgatcttgcgaagaccgcattg
ttcaccaccaagaagggcacgttgtcggcgaacggtacgcgcctgctggccaatctcgac
aaggcgaaagaggtgcccctgtggcgggtgctcgtcggcctgtcgatccgccacgtcggc
ccgcccacggctcgtgcgctggcgaccgaattcggctccttgcaggcgatcgaggacgcc
gacccggaacgcctggccgccgtcgagggggtcggtcccaccctcgcgcagagcattcac
gattggttcaccgtcgactggcatcgcgagatcgtcgagaagtggcgtgctgcaggcgtt
tcgatggaggacgagcgagacgagtcgatcgagcgcacattggagggcaagacgatcgtc
gtcaccgggtcattgcaggatttctcgcgcgacggcgccaaggaagcgatcctcgtccgc
ggcggtaaggcatcgggatcggtgtcgaagaagaccgacttcgtggtggtgggggattcg
cccggctccaaggccgacaaggccgaacaactcggggtacccatcctcgacgaggacggc
ttcaagcaccttctggagacaggcgagccggcgccgaattga
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