Bacillus sp. X1(2014): HW35_12250
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Entry
HW35_12250 CDS
T03242
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gst
Bacillus sp. X1(2014)
Pathway
gst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW35_12250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gst03019
]
HW35_12250
Messenger RNA biogenesis [BR:
gst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HW35_12250
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
ALS2CR8
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AIM16912
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Position
complement(2346245..2347918)
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AA seq
557 aa
AA seq
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MTTNQNTLSIFALGGVNEIGKNMYVVQYGDEIVVIDCGGMFPDESSLGIDLIIPDVSYLE
ENRDKIKALIVTHGHEDHIGGIPYFFKKINVPIYATRFTLGLIELKLEEHRLKGDTKLIA
IDADTRLEFGEIGVSFFKVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPANNQNSDIHK
MAEIGQNGVLVLISESTNAERKGFTPSEQMVANHLMEAFLKADGKIFVSTFASNVNRVQQ
VVEACIKTNRKLALLGRSMVNVLEVAMERGYLSVPEGLVIEASEIEKHASEKIAVLCTGS
QGEPNAALARLAAGNYRDASINPGDTVIMAASPIPGNEKAVSRIIDQLFQLGARVIYGSG
STTGMHVSGHGYQEDLKWMLTLMKPTYFIPIHGEYRMLHHHRQLAESVGVEKGNTFIIRN
GDVVDIQGGIARQTRNVPAGDIYVDGISVGDVGDVVLRDRKQLSEDGMLVIVLTLSKHDG
RIIQGPDTITRGFVYVKNSENLLQEINGLVKKSVEELLVENIRQWNIIKQTIKKTVGQYL
FQQTKRKPMILPIIIEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaccaatcaaaataccttatccatctttgcccttggaggcgtcaacgaaatcggg
aaaaatatgtatgtggtgcaatatggcgatgagatcgtggtcatcgactgtggcggtatg
ttcccggacgaaagctcgctaggaattgatctgattatacctgatgtgtcttatttagag
gaaaaccgagataaaatcaaagctctaattgtaacccatggccacgaggatcatattggt
ggaattccttacttttttaaaaaaatcaatgtaccgatttatgcgacacggtttaccctc
gggctaatagaattaaaattagaggaacataggctaaaaggtgatacgaaactcattgcc
atcgatgcggatacacgactagagtttggagaaattggagtgtcttttttcaaagtcagc
catagtattcctgattgtttaggtattgtttttcacacaccagaaggaaatgtggttcat
accggagactttaaattcgacttaacgcctgccaataaccaaaattctgatattcataaa
atggccgaaatcggacagaatggtgtgctcgtcttaatatcggagagcaccaatgcagaa
cgaaagggattcaccccttcagagcaaatggttgcaaaccatctaatggaggcattttta
aaagcggacgggaaaatctttgtttcaacctttgcttctaatgtaaaccgggtacagcaa
gtagtcgaagcctgcattaagacaaaccggaagctggcgttgttgggtaggagtatggtg
aatgtgttagaggtagcaatggaacgcgggtatttgtccgtaccggaaggattggtcatt
gaagcaagtgagatagaaaaacatgcttcagaaaagatcgctgttttatgcacgggcagt
caaggtgagcccaacgccgctcttgcccgcttggccgctggaaactaccgcgatgcctcg
ataaatccgggagataccgtgatcatggcagcctccccaatacctggcaacgaaaaagcg
gtttcacggattattgaccaactttttcaacttggggctcgtgtcatctatggttccggc
agcacgaccggaatgcatgtttccggtcatggctatcaggaagatttgaaatggatgctt
accctcatgaaaccaacctactttatacccattcacggagagtatcggatgttacaccat
caccggcagcttgcagagtcagttggggtagagaaaggaaatacctttattatccgaaat
ggtgatgtcgtggatattcaaggtggaattgcccgacaaactcggaatgttccggctgga
gatatctatgttgacgggataagtgttggagatgtcggtgacgtggtgctccgagatcga
aagcagttgtctgaagatggcatgctcgttattgttttaacattgagtaagcatgacgga
agaatcatccaaggtcccgacaccattactcgaggatttgtgtatgtgaaaaattccgaa
aacctactacaagagatcaatggtttggtgaaaaagtctgttgaggaattgctcgtggaa
aatatccgccaatggaatatcattaaacaaaccatcaaaaaaaccgtgggacaatatttg
ttccaacaaacaaagagaaaaccaatgattttgccaattattattgagatttag
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