KEGG   Bacillus sp. X1(2014): HW35_12250
Entry
HW35_12250        CDS       T03242                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gst  Bacillus sp. X1(2014)
Pathway
gst03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gst00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HW35_12250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gst03019]
    HW35_12250
Messenger RNA biogenesis [BR:gst03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HW35_12250
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 ALS2CR8 Lactamase_B_6
Other DBs
NCBI-ProteinID: AIM16912
LinkDB
Position
complement(2346245..2347918)
AA seq 557 aa
MTTNQNTLSIFALGGVNEIGKNMYVVQYGDEIVVIDCGGMFPDESSLGIDLIIPDVSYLE
ENRDKIKALIVTHGHEDHIGGIPYFFKKINVPIYATRFTLGLIELKLEEHRLKGDTKLIA
IDADTRLEFGEIGVSFFKVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPANNQNSDIHK
MAEIGQNGVLVLISESTNAERKGFTPSEQMVANHLMEAFLKADGKIFVSTFASNVNRVQQ
VVEACIKTNRKLALLGRSMVNVLEVAMERGYLSVPEGLVIEASEIEKHASEKIAVLCTGS
QGEPNAALARLAAGNYRDASINPGDTVIMAASPIPGNEKAVSRIIDQLFQLGARVIYGSG
STTGMHVSGHGYQEDLKWMLTLMKPTYFIPIHGEYRMLHHHRQLAESVGVEKGNTFIIRN
GDVVDIQGGIARQTRNVPAGDIYVDGISVGDVGDVVLRDRKQLSEDGMLVIVLTLSKHDG
RIIQGPDTITRGFVYVKNSENLLQEINGLVKKSVEELLVENIRQWNIIKQTIKKTVGQYL
FQQTKRKPMILPIIIEI
NT seq 1674 nt   +upstreamnt  +downstreamnt
ttgacaaccaatcaaaataccttatccatctttgcccttggaggcgtcaacgaaatcggg
aaaaatatgtatgtggtgcaatatggcgatgagatcgtggtcatcgactgtggcggtatg
ttcccggacgaaagctcgctaggaattgatctgattatacctgatgtgtcttatttagag
gaaaaccgagataaaatcaaagctctaattgtaacccatggccacgaggatcatattggt
ggaattccttacttttttaaaaaaatcaatgtaccgatttatgcgacacggtttaccctc
gggctaatagaattaaaattagaggaacataggctaaaaggtgatacgaaactcattgcc
atcgatgcggatacacgactagagtttggagaaattggagtgtcttttttcaaagtcagc
catagtattcctgattgtttaggtattgtttttcacacaccagaaggaaatgtggttcat
accggagactttaaattcgacttaacgcctgccaataaccaaaattctgatattcataaa
atggccgaaatcggacagaatggtgtgctcgtcttaatatcggagagcaccaatgcagaa
cgaaagggattcaccccttcagagcaaatggttgcaaaccatctaatggaggcattttta
aaagcggacgggaaaatctttgtttcaacctttgcttctaatgtaaaccgggtacagcaa
gtagtcgaagcctgcattaagacaaaccggaagctggcgttgttgggtaggagtatggtg
aatgtgttagaggtagcaatggaacgcgggtatttgtccgtaccggaaggattggtcatt
gaagcaagtgagatagaaaaacatgcttcagaaaagatcgctgttttatgcacgggcagt
caaggtgagcccaacgccgctcttgcccgcttggccgctggaaactaccgcgatgcctcg
ataaatccgggagataccgtgatcatggcagcctccccaatacctggcaacgaaaaagcg
gtttcacggattattgaccaactttttcaacttggggctcgtgtcatctatggttccggc
agcacgaccggaatgcatgtttccggtcatggctatcaggaagatttgaaatggatgctt
accctcatgaaaccaacctactttatacccattcacggagagtatcggatgttacaccat
caccggcagcttgcagagtcagttggggtagagaaaggaaatacctttattatccgaaat
ggtgatgtcgtggatattcaaggtggaattgcccgacaaactcggaatgttccggctgga
gatatctatgttgacgggataagtgttggagatgtcggtgacgtggtgctccgagatcga
aagcagttgtctgaagatggcatgctcgttattgttttaacattgagtaagcatgacgga
agaatcatccaaggtcccgacaccattactcgaggatttgtgtatgtgaaaaattccgaa
aacctactacaagagatcaatggtttggtgaaaaagtctgttgaggaattgctcgtggaa
aatatccgccaatggaatatcattaaacaaaccatcaaaaaaaccgtgggacaatatttg
ttccaacaaacaaagagaaaaccaatgattttgccaattattattgagatttag

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