Gardnerella vaginalis 409-05: HMPREF0424_0941
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Entry
HMPREF0424_0941 CDS
T01146
Name
(GenBank) putative DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03030
DNA replication
gva03430
Mismatch repair
gva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0424_0941
03430 Mismatch repair
HMPREF0424_0941
03440 Homologous recombination
HMPREF0424_0941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gva03032
]
HMPREF0424_0941
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_0941
Enzymes [BR:
gva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0424_0941
DNA replication proteins [BR:
gva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0424_0941
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0424_0941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
ACC_central
Motif
Other DBs
NCBI-ProteinID:
ADB13871
LinkDB
All DBs
Position
complement(1080891..1081937)
Genome browser
AA seq
348 aa
AA seq
DB search
MAANNKRAQRVMPVTLVVGGDAYLNELNARTVREKVQESAPDAEIIELDASTADQYAFDE
AVGPSLFGDGTIVIINNLQQADESLVDAIENFCKQAQNSENNAQNSENNAQNSENSENFV
DSSATWVIARHEGGLKGKSIITRLTKAGANTITVPDLKKDDAKLNFVMSIFERHNRSVEP
QAAQRLVSVLGSKTGELAALCSQLCFDYDDNPITLDIVDRYLVADPQVTGFFVADKAVAG
HAGSAVLAARTAIAQGVDAIALIGALAAKVRVIALAMAIRNGTISSAEAKVNPWALKMAM
RQLAGWNSAGVSQCLQSLAWADEQCKGGSSDANYALEKCIMLIASRGN
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaataataagcgcgcgcaacgcgttatgccagttacgctggtagttggaggt
gacgcttacttaaacgagcttaatgctcgaactgtgcgtgaaaaagttcaagaaagtgct
ccggatgctgaaattattgaactcgatgcgtcaactgcggatcagtacgcatttgacgaa
gctgtaggtccttcgcttttcggtgacggaacgattgtaataataaataatttgcaacaa
gcagacgagtctttagtagacgcaatcgaaaatttctgcaaacaagcgcaaaatagtgaa
aataatgcgcaaaatagtgaaaataatgcgcaaaatagtgaaaatagcgaaaattttgta
gactcttctgcaacttgggttattgcacgtcacgaaggtgggcttaaaggaaagtctatt
attacgcgccttacgaaagctggcgcaaacacaattacagtgccggatcttaaaaaagac
gatgcaaaactcaactttgttatgagcatatttgagcgtcacaatcgaagcgttgagcct
caagcagcacaacgtcttgtgtcagttttgggaagtaaaacaggagagcttgcagcatta
tgctcgcaattatgcttcgattatgacgataatccaataacgcttgatattgtcgatcga
tacttggttgcagatccgcaagttaccggcttttttgttgcagataaagctgttgcaggt
catgcaggttctgctgtgcttgcagcaagaactgcaattgctcaaggagttgacgccata
gcattaataggtgctttggctgcaaaagtacgcgtaattgcgctcgcaatggcaattcgc
aacggcacgatttctagtgctgaagcgaaagtaaacccgtgggctctgaaaatggcaatg
cgtcagcttgctggatggaatagtgcaggtgtttctcaatgtttgcaatctttagcttgg
gcggatgagcagtgcaaaggcggatctagtgacgcgaattatgcgcttgaaaaatgtatt
atgctcattgcgtctcgaggaaattag
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