Gardnerella vaginalis ATCC 14019: HMPREF0421_21079
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Entry
HMPREF0421_21079 CDS
T01344
Name
(GenBank) putative exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0421_21079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_21079
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HMPREF0421_21079
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HMPREF0421_21079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
PIF1
Motif
Other DBs
NCBI-ProteinID:
ADP39161
UniProt:
E3DAR7
LinkDB
All DBs
Position
complement(1294925..1295797)
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AA seq
290 aa
AA seq
DB search
MELMITITTSNLNGIRAAWRKGMLDWVQDHTPDVWCMQEVRAPQDAIDPIMSKIKDLYTS
KSGESGQNDRRFSVTNQICEIKGRAGVALVTTLPVVEQRYGLPGLSEDVDSGRWVETDVH
TPQGYDITVASVYVHAGNVDDPQKMQQKFRFLDTMLKRLGELRDIAASGGNQAILCGDFN
IAHTPLDIKNAKANEKSAGFLPEERAYIDRWINEYEFVDVMRMLAGDIQGPYTWWSQRGK
AFDNNVGWRLDYQFATPEIAETACGFVIDRAQSYDSRWSDHAALNIKYNV
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
gtggaacttatgattacaattacgacttcaaatttgaatgggattcgtgcggcttggcgc
aaggggatgctcgattgggttcaagatcacacgccagatgtgtggtgtatgcaagaggtt
cgcgctccgcaagatgcgattgatccgattatgagtaaaatcaaggatttgtatacgtct
aaaagtggtgaatctggtcaaaatgacaggcgattttctgttacaaatcagatttgtgaa
ataaaaggtagagctggtgtggcgcttgtaacgactttgccagttgtagagcagcgttac
ggtttgcctggtttaagtgaagacgttgattctgggcgatgggtagaaaccgacgtacat
actccgcaagggtatgatattactgttgcatctgtgtatgttcacgctggaaacgttgat
gatccacagaaaatgcagcaaaaattccgctttctagatactatgttaaagcgattaggg
gagcttagagatattgctgcaagtggcggaaatcaggcgattttatgcggtgattttaat
attgcacacacgcctcttgacattaaaaacgctaaagcgaatgagaaaagtgctggattt
ttgccagaggaacgcgcttatattgatcgttggattaacgagtatgaatttgtggacgtt
atgcgtatgcttgctggcgatattcaaggcccatacacttggtggagtcaacgaggtaaa
gcttttgataataacgttggatggagattagactatcagtttgcaacacctgaaattgca
gaaactgcatgcggattcgtaattgatcgtgctcaaagctacgattctcgctggtctgac
catgctgctttaaacataaaatataatgtgtga
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