KEGG   Komagataeibacter medellinensis: GLX_12510
Entry
GLX_12510         CDS       T01631                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gxy  Komagataeibacter medellinensis
Pathway
gxy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gxy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GLX_12510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gxy03019]
    GLX_12510
   03016 Transfer RNA biogenesis [BR:gxy03016]
    GLX_12510
Enzymes [BR:gxy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GLX_12510
Messenger RNA biogenesis [BR:gxy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GLX_12510
Transfer RNA biogenesis [BR:gxy03016]
 Prokaryotic type
  tRNA degradation factors
   GLX_12510
SSDB
Motif
Pfam: RNB CSD2 S1
Other DBs
NCBI-ProteinID: BAK83663
UniProt: G2I6B6
LinkDB
Position
1437083..1439332
AA seq 749 aa
MKRQRPATSEMPDRLPTGTPHARRGGLPDREQLRAFIENATGRIGKREISREFGLGPEHR
QALRQMLREMALDGTLAPAGARRFRVSARLPESMVVQVTGTDADGDPVARPVQWDGEGVA
PVVFMHPELRGRAALAPGERVVARLRRIGPGKYEGRTLRRLTDAPMQVVGLFRTLAADDP
ATSAPARFRPAGRLTPADRRAKAQWVIPQGEDAGAPDNEIVIATPLPQAGPGLHPARIIE
RLGPQGDARTISMVAIAMLGIPHAFPTEALAQAEAARAVSPAGRTDLRDMPLVTIDGDDA
RDFDDAIYAEPDGTGFRITVAIADVAWYVRPGTALDREARLRGNSVYFPDRVIPMLPEAL
SNGWCSLRPGEDRGCLFVTMDVAADGTMANARFGRGIMRSAARLTYEQVQAARDGAPPDA
AIATLPDGLLDSLFGAWRCLAAARAQRGTLDLDLPERLVRLNDQGQITAIAPRIRLDSHR
VVEEFMIAANVAAARYLEGRHLPCLYRIHAPPTPERLENLRHALDTMGLKLPPVGSLRAA
DLDRILQQARNTDQAALVNELVLRAQNQAEYSPDPIGHFGLSLAAYSHFTSPIRRYADLL
THRALLVAIGLEPGPAPTHEALEDAGEAITRTERRAAQAERETLERYAATWLQVRVGTVM
EAHVSSLSRFGIFTVLDATGTSALLPMSALPQDQWHHDEKTQTLLARDKTMAFRPGQALR
VRIEEACAIRGTVLLALPDSPPARQGRRA
NT seq 2250 nt   +upstreamnt  +downstreamnt
atgaaaaggcagcgtccagcaacttccgagatgccggaccgcctgcccacgggcacgccg
cacgcccgtagggggggcctgcctgatcgtgaacagctccgcgcatttatcgagaacgcc
accggccggatcggcaagcgcgagatcagccgggaattcggccttggccccgaacaccgg
caggcgttgcggcagatgctgcgcgagatggcgctggatggcacgctggcgcctgcgggt
gcccggcgtttccgtgtctcggcccggctgcccgaatccatggtggtgcaggttaccggc
actgatgccgatggcgacccagtggcccgccccgtgcagtgggatggcgaaggcgtcgcc
cccgttgtgttcatgcaccccgaactgcgcggacgtgccgccctggcacctggcgagcgc
gtggtcgcgcgcctgcgccgcatcggccccggaaaatatgaaggccgcacgctgcgccgt
ctgaccgatgcgccgatgcaggtcgtgggcctgttccgcacgctggcggcggatgatccg
gcgaccagcgccccagcccgcttccgccccgcaggccggctgacacctgccgaccgccgg
gccaaggcgcaatgggtcattccacagggggaagatgcgggcgcaccggataacgagatc
gttatcgccacccccctgccccaggccgggccggggctgcaccccgcacggatcatcgaa
cgccttggcccgcagggggatgcacggaccatcagcatggtggccattgccatgctgggc
atcccgcatgcctttcccaccgaagcactggcgcaggccgaagccgcccgcgccgtatcc
cccgcaggccgcaccgacctgcgtgacatgccgcttgtcaccatagatggcgacgatgcc
cgcgattttgacgatgcgatctatgccgagccagatgggacaggcttccgcatcaccgtc
gccatcgcggatgtggcctggtatgtccgccccggtactgcgctggaccgcgaagcccgc
ctgcgcggcaattccgtctattttcccgaccgggtcattcccatgctacctgaggcactg
tccaacggctggtgttcgctcaggccgggagaagaccggggctgcctgttcgtgaccatg
gatgtggccgccgacggcacaatggccaatgcccgcttcgggcgcggcatcatgcgcagt
gccgcccgcctgacctatgaacaggtgcaggccgcgcgtgacggcgcgccacccgatgcc
gccatcgcgaccctgcctgacggcctgctggacagcctgttcggtgcatggcggtgcctt
gccgccgcacgggcgcaacgtggcacgctggaccttgacctgcctgaacggctggtccgg
ctgaacgaccagggccagattaccgctattgcaccacgtatccgcctggacagccaccgg
gtggtggaagagttcatgatcgcggccaatgttgccgccgcgcgctaccttgaagggcga
cacctgccctgcctgtaccgcatccacgcgccccccacgcccgaacggctggaaaacctg
cgccacgcgcttgatacgatgggcctgaaactaccgcccgtgggcagcctgcgtgccgcc
gaccttgatcggatcctgcagcaggcgcgcaataccgatcaggcggcgctggtgaacgaa
ctggtcctgcgcgcgcagaaccaggcggagtacagccccgacccgatcgggcatttcggc
ctgtcgcttgcggcctacagccactttaccagccccatccgtcgctatgcggacctgctg
acccatcgcgccctgctggtggccatcgggctggaacccggcccggcacccacgcacgaa
gcactggaagatgcaggtgaggccataacccgcaccgagcgccgcgcggcacaggccgaa
cgcgaaacgctggagcgttacgccgctacatggctgcaggtccgcgtgggcacggtcatg
gaggcgcatgtctccagcctgtcgcgattcggtattttcacggtactggacgccaccggc
acatccgcccttctgcccatgtctgccctgccacaagatcagtggcatcacgatgaaaaa
acgcagacattgctggcacgcgacaagaccatggcattccgccccggtcaggccctgcgc
gtacggatagaagaagcatgcgcgatccggggaacagtcctgctggcccttcccgattct
ccacccgcccggcagggacggcgggcatga

DBGET integrated database retrieval system