Komagataeibacter medellinensis: GLX_12510
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Entry
GLX_12510 CDS
T01631
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gxy
Komagataeibacter medellinensis
Pathway
gxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLX_12510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gxy03019
]
GLX_12510
03016 Transfer RNA biogenesis [BR:
gxy03016
]
GLX_12510
Enzymes [BR:
gxy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GLX_12510
Messenger RNA biogenesis [BR:
gxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GLX_12510
Transfer RNA biogenesis [BR:
gxy03016
]
Prokaryotic type
tRNA degradation factors
GLX_12510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
BAK83663
UniProt:
G2I6B6
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All DBs
Position
1437083..1439332
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AA seq
749 aa
AA seq
DB search
MKRQRPATSEMPDRLPTGTPHARRGGLPDREQLRAFIENATGRIGKREISREFGLGPEHR
QALRQMLREMALDGTLAPAGARRFRVSARLPESMVVQVTGTDADGDPVARPVQWDGEGVA
PVVFMHPELRGRAALAPGERVVARLRRIGPGKYEGRTLRRLTDAPMQVVGLFRTLAADDP
ATSAPARFRPAGRLTPADRRAKAQWVIPQGEDAGAPDNEIVIATPLPQAGPGLHPARIIE
RLGPQGDARTISMVAIAMLGIPHAFPTEALAQAEAARAVSPAGRTDLRDMPLVTIDGDDA
RDFDDAIYAEPDGTGFRITVAIADVAWYVRPGTALDREARLRGNSVYFPDRVIPMLPEAL
SNGWCSLRPGEDRGCLFVTMDVAADGTMANARFGRGIMRSAARLTYEQVQAARDGAPPDA
AIATLPDGLLDSLFGAWRCLAAARAQRGTLDLDLPERLVRLNDQGQITAIAPRIRLDSHR
VVEEFMIAANVAAARYLEGRHLPCLYRIHAPPTPERLENLRHALDTMGLKLPPVGSLRAA
DLDRILQQARNTDQAALVNELVLRAQNQAEYSPDPIGHFGLSLAAYSHFTSPIRRYADLL
THRALLVAIGLEPGPAPTHEALEDAGEAITRTERRAAQAERETLERYAATWLQVRVGTVM
EAHVSSLSRFGIFTVLDATGTSALLPMSALPQDQWHHDEKTQTLLARDKTMAFRPGQALR
VRIEEACAIRGTVLLALPDSPPARQGRRA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggcagcgtccagcaacttccgagatgccggaccgcctgcccacgggcacgccg
cacgcccgtagggggggcctgcctgatcgtgaacagctccgcgcatttatcgagaacgcc
accggccggatcggcaagcgcgagatcagccgggaattcggccttggccccgaacaccgg
caggcgttgcggcagatgctgcgcgagatggcgctggatggcacgctggcgcctgcgggt
gcccggcgtttccgtgtctcggcccggctgcccgaatccatggtggtgcaggttaccggc
actgatgccgatggcgacccagtggcccgccccgtgcagtgggatggcgaaggcgtcgcc
cccgttgtgttcatgcaccccgaactgcgcggacgtgccgccctggcacctggcgagcgc
gtggtcgcgcgcctgcgccgcatcggccccggaaaatatgaaggccgcacgctgcgccgt
ctgaccgatgcgccgatgcaggtcgtgggcctgttccgcacgctggcggcggatgatccg
gcgaccagcgccccagcccgcttccgccccgcaggccggctgacacctgccgaccgccgg
gccaaggcgcaatgggtcattccacagggggaagatgcgggcgcaccggataacgagatc
gttatcgccacccccctgccccaggccgggccggggctgcaccccgcacggatcatcgaa
cgccttggcccgcagggggatgcacggaccatcagcatggtggccattgccatgctgggc
atcccgcatgcctttcccaccgaagcactggcgcaggccgaagccgcccgcgccgtatcc
cccgcaggccgcaccgacctgcgtgacatgccgcttgtcaccatagatggcgacgatgcc
cgcgattttgacgatgcgatctatgccgagccagatgggacaggcttccgcatcaccgtc
gccatcgcggatgtggcctggtatgtccgccccggtactgcgctggaccgcgaagcccgc
ctgcgcggcaattccgtctattttcccgaccgggtcattcccatgctacctgaggcactg
tccaacggctggtgttcgctcaggccgggagaagaccggggctgcctgttcgtgaccatg
gatgtggccgccgacggcacaatggccaatgcccgcttcgggcgcggcatcatgcgcagt
gccgcccgcctgacctatgaacaggtgcaggccgcgcgtgacggcgcgccacccgatgcc
gccatcgcgaccctgcctgacggcctgctggacagcctgttcggtgcatggcggtgcctt
gccgccgcacgggcgcaacgtggcacgctggaccttgacctgcctgaacggctggtccgg
ctgaacgaccagggccagattaccgctattgcaccacgtatccgcctggacagccaccgg
gtggtggaagagttcatgatcgcggccaatgttgccgccgcgcgctaccttgaagggcga
cacctgccctgcctgtaccgcatccacgcgccccccacgcccgaacggctggaaaacctg
cgccacgcgcttgatacgatgggcctgaaactaccgcccgtgggcagcctgcgtgccgcc
gaccttgatcggatcctgcagcaggcgcgcaataccgatcaggcggcgctggtgaacgaa
ctggtcctgcgcgcgcagaaccaggcggagtacagccccgacccgatcgggcatttcggc
ctgtcgcttgcggcctacagccactttaccagccccatccgtcgctatgcggacctgctg
acccatcgcgccctgctggtggccatcgggctggaacccggcccggcacccacgcacgaa
gcactggaagatgcaggtgaggccataacccgcaccgagcgccgcgcggcacaggccgaa
cgcgaaacgctggagcgttacgccgctacatggctgcaggtccgcgtgggcacggtcatg
gaggcgcatgtctccagcctgtcgcgattcggtattttcacggtactggacgccaccggc
acatccgcccttctgcccatgtctgccctgccacaagatcagtggcatcacgatgaaaaa
acgcagacattgctggcacgcgacaagaccatggcattccgccccggtcaggccctgcgc
gtacggatagaagaagcatgcgcgatccggggaacagtcctgctggcccttcccgattct
ccacccgcccggcagggacggcgggcatga
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