Halomonas sp. KO116: KO116_P100048
Help
Entry
KO116_P100048 CDS
T03800
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KO116_P100048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hak03400
]
KO116_P100048
Enzymes [BR:
hak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KO116_P100048
DNA repair and recombination proteins [BR:
hak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KO116_P100048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
nSTAND3
AAA_22
AAA_16
NTPase_1
AAA_28
AAA
MeaB
AAA_18
AAA_5
Helicase_RecD
CbiA
ParA
RuvB_N
SLFN-g3_helicase
AAA_17
RsgA_GTPase
KTI12
Motif
Other DBs
NCBI-ProteinID:
AJY52805
UniProt:
A0A0D5M980
LinkDB
All DBs
Position
unnamed1:complement(40121..42295)
Genome browser
AA seq
724 aa
AA seq
DB search
MDNLEELSGVISAVRFVGEEGFQILTVRDAQEQEVTLVAVCQPLNEGESVQARGTWGTHP
KFGKQFKADRLITQIPQESKALGAYLASGKVAGIGPKFAARLVAHFGDGLRDVLGDEKAL
RAVSGIGKKKAVGIAASWNEYQEARDALIFLQGHGLGASRAMSVFRQLGQETIAKVSANP
YRTLLKTRGIGFRIADAMAQSLGFELTHRDRLIAGLRHVVDARSASGHTLATSDELASEG
AQLLGVDVARMASVVELLLAHGKLISVESGLVGLPSLVEAERTIATALLARAVLWNGCNL
VRVNGELSDGRVLSDEQRQALEACLAYGVAVLTGGPGVGKTTVTEVLAQTLDDAGLELAL
CAPTGRASRRMSEATGRPASTIHRLLGAGASGFEFNASNPIEADVVIIDEASMVDVPLFL
ALVVALPDHCRLFIIGDQDQLASVGPGNILRDVIGSGAIPVARLQQIRRQGPGSQITVQA
HAVNQGNSPQSVPDSDFEIVEVPEGGDPELVCRVTLRVATEDMLARGFDPLYEVQVLTPM
HGGPVGTRALNEALRSYHVPGDRGSVTIHGRQWAPGDKIVQTENDYNRDVFNGDLGYVVT
ADAEDKTVLARFEDREVLFTSDALGKLQLAYAMTGHKAQGSEFPAVVIPLVRSHWHMLER
QWLYTSLTRGKRRVVLVGHPSAIKRAVNHVTGQRRLTSLPLWLRQPALSVSPTHKGESYG
QTSA
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggacaaccttgaggaattgagcggcgtgatcagtgccgttcgtttcgtaggtgaagag
ggatttcagatcctgactgtgcgcgatgctcaggaacaggaggtaacgctggtggctgta
tgtcagccgctcaacgagggggagtctgtacaggcccgcggcacttggggcacgcatcct
aagttcggcaagcagttcaaagccgatcggctcatcacgcaaatacctcaggagtccaaa
gcgctgggtgcataccttgcgagtggcaaggtggccggcattggccccaagttcgctgcg
cggttggtcgcccatttcggtgatgggctgcgcgacgtactcggtgacgaaaaggcctta
cgggctgtgtcaggcatcggtaagaagaaggcagtggggatagcggcgagctggaatgag
taccaagaagcgcgtgatgcattgatcttcctgcaggggcatggtctgggcgcttcacgt
gcaatgtcggtctttcgccagttgggccaggagaccattgcgaaagtatccgccaacccc
taccgcaccttattgaagactcgaggtatagggtttcgtatagccgatgctatggctcaa
tctcttggcttcgagttgacccaccgcgatcgactcattgcggggcttcgccatgtcgtt
gatgcacgatcagcctcggggcataccctggcaacctcggatgaattggcctcggaaggc
gcgcagctcctcggggtcgatgtagcacgcatggcctcggttgttgagctgctgctggcg
catggaaaacttataagtgttgagagcgggctagttggcctgccttcgctggtggaagcc
gagagaaccatcgccacagcgttgctggcgcgtgcggtgctttggaatggctgcaaccta
gtccgtgttaatggtgagctgtcggatggccgggtgctcagtgatgagcagcgccaagca
ttggaggcctgccttgcgtatggggtggctgtgcttacgggtgggccgggggtggggaaa
accaccgtgactgaggtgctggcgcagacactggacgatgctggccttgagctggcgctg
tgtgcgccaactggccgtgcctctcggcgaatgtcggaggcaaccgggaggccggcgtct
actattcatcgtctcctgggcgctggcgccagcggctttgagtttaatgctagcaacccg
atcgaagcggatgtagtgatcattgatgaagcatcgatggtcgatgtgccgttgtttctg
gctctggtggtggcgctgcctgaccactgccgactgttcatcatcggtgatcaggatcaa
ttggcctcggttgggccgggaaacattcttcgcgatgtgatcggttcgggtgctatccca
gtggcacgtcttcaacagatccggcgacaggggcctggctcgcaaattactgtccaggcg
cacgccgtcaaccagggcaatagtcctcaatcggtgccagatagcgactttgagattgtc
gaagtgccggaaggcggtgaccccgagctggtgtgtcgtgtgacattgcgggtggccact
gaagacatgctggcgcgtggcttcgatcctctttatgaagtgcaggtgttgacacccatg
cacggtggtccggtcggaacccgtgctctcaatgaagcgttacgaagctatcacgtcccg
ggcgatcggggctcggtgacgatccatgggcgccaatgggcgccaggagacaagatcgta
cagaccgagaatgactacaaccgtgatgtctttaatggtgatctcggctatgtagtgacg
gcagacgctgaagacaaaaccgtgctggcgcggtttgaggatagagaagtgctgttcacc
agtgacgcgctcggcaagctgcaactggcctatgcaatgacaggccacaaggcgcaaggg
tccgaattcccggccgtggtcattcctctagtgcgatcgcactggcacatgcttgagcga
cagtggctttatacaagcctcactcgtggaaagcgccgtgtcgtactggttggccaccct
tctgctatcaagcgagccgtcaaccatgtcaccggccagcgccggctcacctcactaccg
ctttggttgcgccagccggccctatcagtatcaccaacccataaaggagagagctatggc
caaacgagcgcttga
DBGET
integrated database retrieval system
