Hafnia alvei: AT03_15660
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Entry
AT03_15660 CDS
T03425
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hav
Hafnia alvei
Pathway
hav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AT03_15660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_15660
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AT03_15660
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AT03_15660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_30
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
AIU73681
UniProt:
A0A097R4M8
LinkDB
All DBs
Position
complement(3368535..3370553)
Genome browser
AA seq
672 aa
AA seq
DB search
MSKTFKLHSAFKPDGDQPEAIRRLEAGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVMAPNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIE
QMRLSATKALLERKDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMIIDQRAILRRLSELQ
YARNDQAFQRGTFRVRGEVIDIFPAESEDEALRVELFDEEVERLSLFDPLTGQLIQEVQR
FTVYPKTHYVTPRERILQAMEDIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRKPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGSDIVDQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIREAINERVLVTTLTKRMAEDLTEYLDEHGVRVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITNSMEKAIGETERRRAKQEAYNLEHGITPQALNKKVSDILQLG
EASSRGKGKHGRSSKAAESSAAYQALSPKQIEQKIRDLEAQMYKHAQNLEFEEAASLRDD
IQALRDQFIAMS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacgttcaaattgcattctgcattcaagccagacggcgaccagcctgaggcg
attcgtcgtttagaggcaggtttagaaaatggtttggcgcatcaaacgctgttaggtgta
acgggatcaggtaagacgtttacgattgccaatgtgattgccgacctcaaccggccaact
atggtcatggcacccaacaaaacgttggcggcacagctttatggcgagatgaagcagttt
ttcccagaaaatgctgtggaatattttgtctcctactatgactattaccagcccgaagcc
tatgtgccgagttcagatacctttattgagaaagactcctcggtaaacgaacatattgaa
caaatgcggctttcagcgacgaaagcgctgcttgagcgcaaagatgtcattgttgtggcc
tcggtttcagccatttatggcttgggcgatcctgatgcctatttgaaaatgatgctgcat
ttaacacgtggcatgattatcgatcagcgagctatcttgcgccgtttatccgaactgcaa
tatgcgcgcaacgatcaggcgtttcagcgtggtacctttcgcgttcgcggtgaagtgatt
gatattttccccgccgaatccgaggatgaggcattacgcgttgagctgtttgatgaagaa
gtggaacgtctatcgctgttcgacccattaacgggccaactgatccaagaagttcagcgt
tttaccgtgtatccaaaaacgcactacgttacgccgcgtgaacgcatcttgcaggcgatg
gaagatattaaggttgatttggcagagcggcgcaaagtattgctggccaataacaagctg
ctagaagagcaacggttgacgcagcgtacacagttcgatctcgaaatgatgaacgagcta
ggctattgctcgggcattgaaaactactcgcgctatctctctgggcgtaagccgggtgaa
gcgcctccaacgctgtttgattatcttcctgccgatgggctgctggtgatcgatgaatcc
cacgtcaccatacctcaaattggcggcatgtatcgcggcgaccgagcgcgcaaagagacg
ctggtggagtatggattccgcttgccttctgcgcttgataaccgcccaatgcgctttgaa
gagtttgaggctttggcaccgcaaactatttatgtgtctgcaaccccaggtaattatgag
cttgaaaaatcaggcagtgatattgtcgatcaggttgtgcgtccgactggtttgcttgat
ccattgattgaggtgcgtccggttgccacgcaggttgacgatttgctctctgaaattcgt
attcgcgaggcgattaatgagcgtgtactggtcactacgttgaccaagcgaatggcggaa
gacttaactgaatacctcgatgaacacggtgtgcgggttcgctatctgcactctgatatc
gataccgtcgaacgtgtagagatcatccgagatcttcgcctcggtgaatttgatgttctg
gttggtatcaaccttcttcgtgaagggctcgatatgccagaggtttctttggtcgcgatt
ttagatgcagacaaagaaggcttcctacgttcagagcgttcgctgattcagaccattggc
cgtgcggcacgtaacctgaatggtaaagcgattctttatggcgatcgcatcaccaactct
atggagaaagcgattggtgaaactgaacgtcgtcgtgcaaaacaggaagcgtataacctt
gagcatggcatcacgccacaggcgctgaataagaaagtttccgatattctccaactgggt
gaagcgtcgtcacgtggtaaaggtaagcatgggcgaagcagcaaagcggctgagtcttct
gcggcttatcaagcgctgtcaccaaaacagatcgagcagaaaattcgcgatctggaagcg
cagatgtataaacatgctcaaaaccttgagtttgaagaggccgccagcctcagggatgat
attcaagcgttgcgcgatcagttcattgcgatgtcttga
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