Hirschia baltica: Hbal_1580
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Entry
Hbal_1580 CDS
T00945
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hba
Hirschia baltica
Pathway
hba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hbal_1580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hba03400
]
Hbal_1580
Enzymes [BR:
hba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hbal_1580
DNA repair and recombination proteins [BR:
hba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hbal_1580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACT59268
UniProt:
C6XJH3
LinkDB
All DBs
Position
1667245..1670703
Genome browser
AA seq
1152 aa
AA seq
DB search
MKVWDTIAGLKAPIDAYESPFGADVRVFVEAINKRKGVGVYVARDERQALQVLSIAKFFQ
PHMAMINFPAWDCLPYDRVSPTAHISAMRCSALARLSHRDPKEKILVVTTAHALVQRVAP
VTKMAEASFAAGIGADVDQQALQDYLTINGYTRTDIVREPGEYAIRGGIVDIYPPDRIEP
VRLDFFGDNLESIRSFDAESQRSTNDLKEIAFAPVSEIFFTDEALTLFRRNYLESFGPPG
GDPSYEAARAKIRRQGIDQWLPLFHEKLETLLEYAGNDALLGFDNQAETVGLDRIAQAKD
YFETRVHAAGGDVMDAKVLAPDKLYLSKDEFELTRSSGAVVRFHPSENPGKKDVLFVGAR
AGKDFAVERSNPEANVFDAAVSLAKEHLANKRKVVFAAWSAGSADRLKTVLSDHGLPEVR
SAEDWSAAKAANAPVIVETSMESGFTFSDLAVIAEQDMLGDKLARPRKRKRKTASYIAEA
AALSPGDMIVHIDHGVGRYEGLQTVDVGSAPHDCLELVYAGGDKILLPVENIELISRYGA
DSGEGSMDKLGGAGWQSRKAKAKKNIMEMAGDLIRIAAEREMRKAEKTADADGLFDEFCA
RFPYEETDDQLNAIEDCLSDLASGKPMDRLVCGDVGFGKTEVALRTAFVAAMSGMQVAII
APTTLLARQHYRTFKERFEGWPIKVRQLSRFVSAKEQTTTREMLASGDADVVVGTHAVIS
KQVKFKRLGLLVVDEEQRFGVKHKERMKEMKADIHVLTLSATPIPRTLQLALTGIRDLSI
IATPPIDRLSVRTYTVEFDPVTVREALLRERYRGGQSYFIAPRVSDLPFLERFLREQVPE
VSFLSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIVIHRADKFGLAQ
LYQLRGRVGRSKLRAYAYMTTKKDMVLSETAEKRLKVLQSLDSLGAGFMLASHDLDMRGG
GNLLGDAQSGHVREVGVELYQQMLEDAVNALKTGEVEPSDDWSPMIDLGAAVLIPDYYVA
DLTERLSLYRRLSDLETEEERESFAAELIDRFGELPDETKQLLEVTAVKNMCKELGISKL
TSGPKGAVITFRDKPPIDPAQLIAWVHTRPSMMKLRPDMKLVINGTWPNAEHRLKAVKGV
LRELDSAAKDSD
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttgggatacgattgcagggctaaaagcgcccatcgacgcgtatgaatctcca
tttggagcggacgtgcgtgtgtttgttgaagctatcaataaacgcaaaggcgttggcgtg
tatgttgcgcgtgatgaacgccaagctctgcaagtgttatcaatagcaaaattcttccag
ccacatatggcaatgatcaattttccggcttgggattgtctgccttatgatcgcgttagc
ccaacggcgcacatttcggctatgcgctgttctgcgcttgcaagattatctcacagagat
cctaaagagaaaattcttgtcgtcacgaccgctcatgcgcttgttcagcgagttgcacct
gttaccaaaatggcagaagccagttttgctgccgggataggcgctgatgttgatcagcaa
gcactacaggattatctgacgattaatggttatacgcgaaccgacatcgttcgtgagccg
ggtgaatatgccattcgcggtggtattgtcgatatatatccgccggatagaattgagccg
gtgaggttggatttttttggagataatcttgaatctatccgctcttttgatgctgaaagc
caacggtctacaaacgatcttaaagaaatagctttcgcaccagtcagtgaaatcttcttc
acagatgaagcgcttactttatttcgtcgaaattatcttgagagctttgggccaccaggt
ggtgaccctagttatgaagctgcacgcgctaaaatacgcaggcagggtatagaccagtgg
cttcctctttttcacgaaaagctggaaacgcttttagaatatgccggtaatgatgcgctg
ttagggtttgataatcaggctgaaacagtagggttggataggattgcacaagctaaagat
tattttgaaacccgcgttcatgctgctggcggtgatgtcatggatgccaaagtattggct
cctgacaagctttatctttccaaagacgaatttgaattaacgcgatcttcaggtgcggtg
gttcgttttcatccttctgaaaatccaggaaagaaggatgttctatttgtcggtgctcgc
gcaggcaaagattttgcggttgaacggtccaatccagaagccaatgtttttgatgcagca
gtgagtttagcaaaagaacatttagccaataaacgaaaagtggtgtttgcagcttggtca
gcgggatcagcagatcgtttgaaaactgttctgtcagatcatggattgccagaggtgcgg
agcgctgaagattggtcagcagcgaaagctgcaaatgcacctgtcatcgttgaaacgtcc
atggaatctggttttacgttttctgacttagctgtcatcgccgagcaagatatgctgggt
gataagctggcaagaccacgcaaacgtaagaggaaaacggctagttatattgcagaagcg
gccgctttgtctcccggtgatatgattgttcatattgatcatggtgtgggtcggtatgag
ggtcttcagactgttgatgttggatcagccccgcatgactgtttagagctagtttatgcc
ggtggcgataagattcttttacccgttgaaaacatagagttgatcagccgttacggtgca
gattccggtgaaggatcgatggataagctgggcggcgcgggatggcagtctcgcaaagct
aaagctaagaaaaatataatggaaatggcaggcgaccttattcgcattgccgcagaacgc
gaaatgagaaaagcggagaaaactgctgatgcagatggtctgtttgatgagttttgtgca
cgttttccatatgaagaaacggatgatcaacttaatgctatagaagattgtctgagtgat
ttagcatcgggtaagccgatggatcgcttagtttgtggggatgtcggctttggtaaaact
gaagtcgcgcttcgcacagcttttgttgcggcaatgagcgggatgcaggtcgctattatc
gcgccgacaacactattggcacgtcagcattatagaacgttcaaagagcggtttgagggg
tggccaatcaaggtgcggcagctctcgcggtttgtatcggcaaaagagcaaaccacgaca
cgcgaaatgcttgcaagcggtgacgcagatgttgttgtgggcacacatgcagtgatttca
aaacaagtaaaattcaagcgtcttggcttgctggttgtagacgaagaacagcgttttggg
gttaagcataaagagcgcatgaaggagatgaaagccgatattcatgtgctaactctttct
gcaacgcctattcctagaacactgcaattggcgcttacgggtattcgtgatctatccatt
atcgccacgccgccaatcgatcgattatcagtgcgtacatatacggttgagtttgatccg
gtgactgtgcgggaagctttactgagagaacgttatcgaggtggtcaatcgtattttatt
gcgcctcgtgtgtctgatctgccattccttgagcgttttctacgtgagcaagttccagaa
gtgtcgttcttgtctgcgcatggacaaatggcatcgggccaacttgaagacattatgaat
gatttttatgatggtaaagccgatgttcttcttgcaacaacgattgtggaatctggctta
gatattccgcgtgccaacactatcgttatccatagagctgacaaatttggtttggctcag
ctttaccaacttcgtggtcgtgtagggcgctctaaacttcgtgcgtatgcctatatgacg
acgaaaaaagacatggtgctttcagagacagctgaaaaacgcctaaaagtgttgcaatcg
cttgatagtcttggcgctggtttcatgctggctagccatgatctagatatgcggggcggg
ggtaacctgctgggggatgcacaatcgggacatgtgcgcgaggtgggtgttgagctgtat
caacaaatgctggaagatgctgtaaatgcgcttaaaacaggtgaagtagaaccatctgat
gattggtcaccaatgattgatcttggcgctgctgttcttatccctgattattatgtggct
gatctgactgaacgtctatcattgtatcgtcgtttgtctgatcttgaaactgaggaagag
cgtgaaagctttgcagccgaattgattgaccgatttggtgaacttccagatgaaaccaag
caattgcttgaggtcactgctgttaaaaatatgtgtaaagagcttggcatttccaagctc
acgtctggccctaaaggtgcagtcattacattccgtgataaaccgccgatagatcctgca
caattaattgcttgggttcatacacggccaagcatgatgaagctacggccggatatgaag
cttgttatcaacggaacttggccaaatgccgaacatcgattgaaggctgtgaaaggtgtt
ttaagagaattagacagtgcggcgaaagattcagattag
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