Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_1733
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Entry
HCBAA847_1733 CDS
T02494
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCBAA847_1733 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcb03021
]
HCBAA847_1733 (rpoB)
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_1733 (rpoB)
Enzymes [BR:
hcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCBAA847_1733 (rpoB)
Transcription machinery [BR:
hcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCBAA847_1733 (rpoB)
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCBAA847_1733 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAM32962
UniProt:
I7HDR5
LinkDB
All DBs
Position
complement(1632752..1641106)
Genome browser
AA seq
2784 aa
AA seq
DB search
MANFTKLKNRLRADFTKNPQSIDVPNLLLLQRNSYDDFLCIDGDKESGIERVFKSVFPIQ
DNQNRITLEYAGCKFGKPKYTTNEAMVRGVTYAISLQIKIRLVLWEKDEKTGERLGVKDV
KEQNIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESNTSSNKLIYTGQIIP
DRGSWLYFEYDAKDVLYARINKRRKVPVTIILRAMGYSKQDILKIFYPLQKVKYQKGKYL
IPFDIDSIGTRAEFDIKDSKGNLLVASGKRLSAKKIKELKEAKIGLIEYPLESLSNKFLA
EPVVNAEGEVLFDTLTQLDELKLKKLHELKVNEFVIANDSAAGVDNSIINSFIADAESLK
MLRQSEKIDDENDLAAIRIYKVMRPGEPVTKEVAKSFVRQLFFDSERYDLTRVGRMKMNH
KLQINVPDYVTVLTHEDILKTIQYLLKVKNGLGKIDDRDHLGNRRIRSIGELLANELHSG
LVKMQKAIRDKLTSLSGVFDTIMPHDLVNGKMITSTIMEFFTGGQLSQFMDQTNPLSEVT
HKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTYTRVNDLG
FIEAPYKKVENGIVTDEIVYLTAAQEEGLVIAPASTAVDKDGRIIEDLIETRKDGEILLG
EKSRVQLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPIVGTGIE
QVIARDSWEATKAKRGGVVEKVDSKNIYILGEDDNGAYIDHYYLGKNLRTNQNTCFSQQP
IVRQGDSVEEGQIIADGPSMDSGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIEEDAFT
SIHIYEKEIEARELKHGLEEITADIPGTKETETAHLDESGIVRIGTYVSGGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYEKDARAISAY
EEEKKVLDIEHHDILTMIQQEEILRISLMLSKEKLISEAKIADKTFKKGTQIPKEELSVL
NPFALSTLIKSYSKEVQSRYEQIKTNFLEQKKTLGEEHEEKLSILEKDDILPSGVVKLVK
IYIATKRKLKVGDKMAGRHGNKGIVSNIVPMVDMPYTADGEPVDIVLNPLGVPSRMNIGQ
ILEVHLGLVGKNLGRQLEEVLNSQSKQWVEILRSKMIEIHKLVNPEDKAMLDFLQKLDDE
RLIGYARDWSRGVKFAIPVFEGIKQEQFDKLFALAKIDTDGKTELYDGKTGEKMRERVNV
GYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTL
KEMLTIKSDDTEGRRGAYKAITKGERVGESEIPETFYVLTKELQSLALDVNIYGEEVDEN
GMPVPITIKEDDRPKDFSSFQLVLASPEKILSWSRGEVKKPETINYRTLKPERDGLFCTK
IFGPVRDYECLCGKYKKMRYKGIVCEKCGVEVTKAKVRRSRMGHIELVAPVAHIWYVSSL
PSRIGTLLGVKMKDLERVLYYEAYIVKNPGEAFYDNEGSKPILKYDVLNEEQFQSINQRF
EHTGFVAQMGGEAIKELLEELDLTQLLGSLREEIKSTNSEAKKKTIVKRLKVVESFINSG
NRPEWMMLTILPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLIELDSPEII
VRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDQCGLPKNMALELFKPHLFAKLEEKGYATTLKQAVKMVNQKTNEVWEC
LQEIVEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKLLMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKKGVKGEHKIFGSID
EIVMAIEMGELDINARIKTVYERRVIDTTAGRMILSSILPDFVPLSLWNQTMKKKDIGAL
IDYVYKEGGLGITATFLDNLKNLGFKYATKAGISISAADIIIPQDKMGMIEEAKKEIKRI
QGEFEQGLLTAQERYNKSIDIWTETSEKMGKLMMEKVKTDKQGFNSIYMMADSGARGSEA
QIRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNMKVTIEDCGTHEGVEITDITVGSDMIEPLEERVVGRVLARDIIDPIANE
ILLSEGVLIDVAMAKRIKEANVKSVMIRTPVTCKAPKGVCAKCYGLNLGESKMVKPGEAV
GVLAAQSIGEPGTQLTLRTFHVGGTASRSTEEKQIVAKKEGFIRYHNIRTYTNSKGQKIV
ANRRNATILVVEPRIKAEFDGELLVENIHDEVHITIVGDKKRTETYRLRKDDVAKQNELA
GVTGKIEGKLLVPHESGYKVKVGGSIVDTIMDSWNVPTRIPYGSELKVEDNAPISQKIVA
KEKGIVKFYTLRADTLERNHDVKKGMVVSEKGMFAVIADQNDREAIRHYIARTSKILVDD
NSEVKIDTLISEPSSDEHIVVAEWDAYSEPVIADQAGVVSFRDIIAGITVSEQEDENTHQ
KNFVINEYVPAGYKPMLVVTTKDGKEISYRLESRTSIAVNDGDKVEVADIIAKVPKALAK
SKDITGGLPRVTELFEARKPKDTAILSELDGTVSFGKPIRGKERIIITSSDGRVAEYAVD
KNKKILVHENEFIHAGEAMTDGVVSSHDILRISGEKELHKYIVSEVQQVYRRQGVSIADK
HIEIIVSQMLRQVKIVYSGNTKFF
NT seq
8355 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacttcacaaaattaaaaaatagactccgagcagactttacaaaaaatcctcaa
agtatagatgttcccaatcttttgcttttgcaaagaaatagttatgatgattttctttgt
attgatggtgataaagaatctggtattgaacgcgtatttaagtctgtttttcctatccaa
gataatcaaaatcgcatcacgcttgaatatgctggttgtaaatttggcaaacctaaatat
acgaccaatgaagcaatggtgcgtggtgtaacttatgccatttcattgcagattaaaatt
cgtcttgtattgtgggaaaaggacgaaaaaaccggcgaaagattaggtgtaaaagatgta
aaagaacaaaatatttttgtgcgtgatattccattgatgacagatagaacaagctttatt
atcaatggtgttgaacgcgtggtggttaatcagcttcatcgcagcccgggtgtcattttc
aaagaagaagaatctaatacttcatcaaataagcttatctatacggggcagattatccca
gatcgcggctcttggctgtattttgaatatgatgctaaagatgtgttgtatgcgcgtatc
aacaaacgccgtaaagtacctgtaacaatcattttgcgtgctatggggtatagtaagcag
gatattcttaagattttctatccactgcaaaaagtaaaataccaaaaaggcaaatacctt
attccttttgatattgatagtattggtacgcgtgcagaatttgacatcaaggattctaaa
ggcaatcttttagtggcatctggcaagagactctcagctaaaaaaatcaaagaattaaaa
gaggctaagattggtcttatagaatatccacttgaaagcttgagtaataaattccttgct
gagcctgttgttaatgctgaaggcgaggtgctatttgataccttaacacaacttgatgag
ctaaagcttaaaaaacttcacgagcttaaagttaatgagtttgtcattgccaatgatagt
gcagcaggtgtggataactcaattatcaattcatttattgccgatgcagaatcgcttaaa
atgcttcgccaaagtgaaaagattgatgatgaaaatgacttggctgctattagaatctac
aaagttatgcgtcccggagagcctgtaacaaaagaggttgcaaaaagttttgtgcgtcaa
ttattctttgattcagagcgttatgacttgacacgcgttgggcgtatgaaaatgaatcat
aaacttcaaattaatgtccctgattatgtaacagtgctgacacacgaagatattcttaaa
acgattcaatatttgcttaaagtcaaaaatggactaggtaaaattgatgatagagaccat
cttggtaatcgtagaatccgctctatcggtgagcttttggcaaatgagcttcactctgga
cttgtcaaaatgcaaaaggctatccgcgacaagcttacttcattaagtggtgtatttgat
acgattatgcctcacgatttagtcaatggcaagatgattacaagcacgattatggagttt
ttcaccggcggacagctttcacaatttatggaccaaactaatccactctcagaagttact
cacaaacgccgactttccgcacttggtgagggtgggcttgtgaaagatagagtaggtttt
gaagcaagagatgtgcatcctacgcattatggtagaatctgccccattgaaacgccagaa
gggcaaaatattggtttgattaacacactttcaacttatacccgcgtaaatgatttgggc
tttattgaagcaccgtataaaaaggttgaaaatggcattgtaactgatgagattgtttat
cttactgctgctcaagaagaaggacttgttatcgctcctgcaagcacggctgtggataaa
gatggtcgcattattgaagatttgattgaaacaagaaaagatggtgagattctcctgggg
gaaaaatctcgcgttcagctcattgacttaagccctagaatgcttgttggtgtggctgct
tcactcattccatttttagagcacgatgatgctaaccgtgctctaatgggttctaatatg
cagcgtcaagctgtgccactattaaagcctgatgcacctattgttggcacagggattgag
caagtgattgctcgtgattcttgggaggcgacaaaggcaaaaaggggcggtgttgtagaa
aaggtagattctaaaaacatttatattcttggcgaagatgataatggtgcatacattgat
cactattatttgggtaagaatctgcgaacaaaccaaaatacttgtttttcacagcaacct
atcgtgcgacaaggtgatagcgtggaagaaggacaaattatcgccgatggtccaagtatg
gatagtggtgagttagctttgggaaaaaatatccgtgtagcctttatgccgtggaatgga
tataactttgaagatgccattgtggtgagtgaaaagcttattgaagaagatgcttttact
tctattcatatttatgaaaaagaaattgaagcgcgtgagcttaaacacgggttagaggag
attacagctgatattccgggcacaaaagaaacagagaccgctcatcttgatgaaagtggg
attgtaaggattgggacttatgtaagtgggggcatgattcttgttgggaaggtctctcct
aagggtgaagtgaagcctacgcctgaagagagattattgcgtgcgatttttggcgaaaaa
gcaggacatgtggtgaataagtccctatattgtcccccttcacttgagggaactgttgtt
gatgtaaaaatctttacaaaaaagggttatgaaaaagatgctcgtgccataagtgcgtat
gaggaagaaaaaaaggtgcttgatatagagcatcacgacatattaacgatgattcagcaa
gaggagattttgcgaatttcacttatgctttcaaaagaaaagcttataagtgaagcaaaa
attgctgataagacatttaaaaaaggcacacagattccaaaagaagagctaagcgttttg
aatccttttgctctaagcactttgattaaaagctattccaaagaggtgcaaagccgatat
gagcagattaagacaaacttcttagaacaaaagaaaactttgggcgaagagcacgaagag
aaactctctatcctagaaaaagatgatattttgcctagcggtgttgtaaagcttgtaaag
atttatatcgctacaaaacgcaaactgaaagtgggcgataaaatggctggacgacacgga
aataaaggtattgtctcaaatatcgtccctatggtagatatgccttatactgctgatggt
gagcctgtggatattgttcttaatcctttgggtgtgcctagccgtatgaatattgggcag
attcttgaagtgcatttggggcttgtaggtaagaatcttggacgccaacttgaagaagtt
ctcaattcacaatcaaagcagtgggttgagatattgcgttcaaaaatgattgagattcat
aagcttgtgaatccagaagataaggcaatgttagattttcttcaaaagcttgatgatgag
cgtttaattggctatgcacgagattggagcaggggtgtgaagtttgctatccctgtattt
gagggtatcaagcaagagcagtttgataagctttttgccctagctaaaattgacaccgat
ggtaagacagagctgtatgatggaaaaacaggtgaaaaaatgcgtgagcgtgtcaatgtg
ggttatatgtatatgctcaaacttcatcatcttgttgatgaaaaagttcacgcacgaagc
acaggaccttactcgctagttacgcaacagcccgttggtggaaaggcactctttggtggg
caacgctttggagaaatggaagtgtgggcattggaagcttatggagcagctcatacgctt
aaagaaatgcttacaattaaatctgatgatacagaaggacgcaggggtgcgtataaagcg
attacaaaaggtgagcgcgttggggaatctgagattccagagactttttatgttttgaca
aaagagcttcaatctttggcacttgatgtgaatatttatggcgaagaagttgatgaaaat
ggaatgcctgtgcctattaccattaaagaagatgatcgtccaaaggactttagctcgttc
caactagtgttggcaagtccggagaaaattctctcttggagtcgtggcgaagtcaaaaag
ccagagacgattaattatcgcacattaaagcccgaacgcgatggactattctgcacgaaa
atttttggaccggtgcgtgattatgagtgcttgtgtggaaaatacaaaaaaatgcgttat
aagggcattgtatgtgaaaaatgcggtgttgaagtaacgaaagcaaaagttcgtcgctct
cgtatggggcatattgagcttgtagcacctgtggcacatatttggtatgtaagctctttg
cctagtcgtatagggacattgcttggcgtgaaaatgaaagatttagagcgtgttttatac
tatgaagcgtatattgttaagaatcccggcgaggcattttatgataatgaaggctcaaag
ccaattttgaaatatgatgtgctgaatgaagagcaattccaaagtattaatcaacgcttt
gaacataccggctttgtggcacaaatgggcggagaggcgattaaggagcttttagaggag
ctagatttaacgcaacttctaggttcattgcgtgaagagataaaatcaacaaattccgaa
gcaaagaaaaagactattgtaaaaagattgaaggttgttgaaagctttattaattccggc
aatcgcccagaatggatgatgctgacaatcttgccggtgttgccaccagatttgcgtcct
ttggttgcacttgatggcgggaagtttgctgtgagtgatgtcaatgacttgtatcgccgc
gtgattaaccgcaatcaacgcttaaagcgactgattgagctagattcaccagaaattatt
gtccgcaacgaaaagagaatgctccaagaagctgttgatgcgttgtttgataatggcaga
aatgctaatgcggtgaagggtgcaaacaaacgaccgcttaaatcgctttcagagattatc
aaagggaagcaaggacgctttagacagaatctgctcggtaagagggtggatttctctggg
cgaagtgttattgtcgtgggaccaaatcttaagatggatcaatgtggattgcctaaaaat
atggcattagagctatttaagccacatttatttgcaaagcttgaagagaaagggtatgct
acgacgctcaaacaagctgtaaaaatggtgaatcaaaagacaaatgaagtgtgggagtgt
ttgcaggagattgttgaaggttatccagtgctactcaatcgtgcgccaacattgcataag
cagtctattcaagcatttcacccaaaattgatagatggcaaggcgattcagcttcaccca
cttgtatgttcggctttcaatgcagactttgatggtgatcaaatggcggtgcatgtgcca
ctttcacaagaagctatcgccgaatgtaagctacttatgcttagttctatgaatatcctt
ctacctgcaagcggtaaggcagtagctgtgcctagccaagatatggttttgggcttatac
tatctgtctttagagaaaaagggcgtgaaaggtgagcataagatttttggaagtattgat
gagattgttatggcgattgaaatgggtgagcttgatattaatgcacgcattaaaactgtg
tatgaaagacgcgtgattgatacaactgctgggcgtatgattttaagctccatattacct
gattttgtgccgttaagtctatggaatcaaacaatgaagaaaaaggacattggtgcattg
attgattatgtatacaaagaaggcggactaggcattacagcgactttccttgataatctt
aagaatcttgggtttaaatatgccacaaaagcaggtatttcgatttctgcggctgatatt
attatccctcaagataagatgggtatgatagaagaggctaaaaaagagattaagagaatc
caaggtgagtttgagcaaggacttcttaccgcacaagagcgatacaataagagcattgat
atttggacagagacaagtgaaaaaatgggcaaactgatgatggagaaagttaaaactgat
aagcaaggctttaactctatctatatgatggcagattcaggagcgagaggtagtgaggca
cagattcgtcagctttctgcaatgagagggcttatggctaagcctgatggcacgatcatt
gagacgcctattacatcaaactttaaagagggcttgaatgtattagaatacttcaattca
acgcacggagcgagaaaaggtctagctgatacggcgttaaaaacggcaaatgctgggtat
ctcacaaggaagcttattgatgtaagccaaaatatgaaagttaccattgaggattgtggc
acacacgagggtgtggagattacagatattaccgttggaagtgatatgattgagccgctt
gaagagcgtgtagttgggcgtgtgttggcacgagatattattgaccctattgctaatgag
attctattgagcgagggtgtgcttattgatgtggcaatggcaaaacgcattaaggaagca
aatgttaaatctgtaatgatacgcactcctgtaacttgtaaggctccaaagggtgtgtgt
gcgaagtgttatggactgaatcttggcgagtctaagatggttaaacccggtgaagctgtt
ggggtattggctgcacaaagtatcggtgagccgggcactcagcttacgcttagaacattc
cacgttggtgggacggcaagcagaagcacggaagaaaagcaaatcgtggcgaaaaaagaa
ggctttatccgctatcacaatatccgcacttacacaaatagtaaggggcaaaagattgtg
gcaaatcgcagaaatgctactattcttgttgtggagccacgcattaaggcggagtttgat
ggggaacttttggttgaaaatatccacgatgaagtgcatattactattgttggtgataag
aagcgaactgaaacttaccgcttaaggaaagatgatgtagccaagcaaaacgagcttgct
ggggttacaggtaagattgagggcaaactccttgtgccacacgaaagcggatataaggtt
aaggttggtggaagcattgttgatacgattatggatagttggaatgtccccactcgcatt
ccttatggaagtgagctaaaggttgaagacaatgcgcctatttctcaaaaaatcgtggca
aaagagaagggtattgtgaagttttatacactccgtgccgatacgcttgagcgtaatcac
gatgtgaagaaaggtatggttgtatcagaaaaaggtatgtttgctgttattgctgatcaa
aatgatagggaggctatccgccattatattgcgagaacttctaagattcttgttgatgat
aatagtgaagtgaagattgacacacttatttccgagccaagttcagatgagcatattgtt
gtggcagaatgggatgcgtatagtgagcctgtgattgctgatcaagcgggtgttgtatca
tttagagatattatcgcaggtattacggtgagtgagcaagaagatgagaatacacatcaa
aagaatttcgtgattaacgagtatgttccagctggttataagcctatgcttgttgttacc
acaaaagatggtaaggagataagctatcgtctagaatctcgcacatctattgcggtgaat
gatggagataaggtagaagtggctgatattattgctaaagtgcctaaagcattggcaaaa
tcaaaagatattaccggtggtcttccacgcgttacagaactctttgaggcaagaaagcca
aaagatactgccattctttcagagcttgatgggacggtgagttttggtaagccgatacgc
ggtaaggaaagaatcattatcacttctagtgatggtcgcgtggctgaatatgctgtggat
aaaaataagaagattctcgtacacgaaaatgagtttatccacgcaggggaggcgatgact
gatggtgtggtttcaagccacgatatcttgcgtatcagtggggaaaaggaactccacaag
tatatcgtaagtgaagtgcagcaagtatatcgccgacaaggtgtaagtattgctgataaa
catattgagattattgtgtctcaaatgctgcggcaggtaaagattgtttatagcggcaat
acgaaatttttttaa
DBGET
integrated database retrieval system
