Hahella chejuensis: HCH_04971
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Entry
HCH_04971 CDS
T00307
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
hch
Hahella chejuensis
Pathway
hch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCH_04971 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_04971 (uvrB)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCH_04971 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HCH_04971 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
UVR
ResIII
DEAD
DUF87
Kinesin
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ABC31661
UniProt:
Q2SCG3
LinkDB
All DBs
Position
complement(5108864..5110876)
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AA seq
670 aa
AA seq
DB search
MQKFQLKANYQPAGDQPGAIAGLVDGLRDGLLHQTLLGVTGSGKTFTMANVIAEMQRPAM
VMAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ
MRLSATKALMERKDVVIVATVSAIYGLGDPQSYKKMMLHLDRGDKVDQRSLLRRLAELQY
TRNDLELHRANYRVRGDVIDVFPAESESDALRIELFDDEIESLSWFDPLTGEVYRRVPRA
TIYPKTHYATPRQVILDATEQIKTELQERLQQFRGSSKLLEAQRLEERTRYDLEMMYELG
YCNGIENYSRYLSGRQAGEPPPTLFDYLPSDALLFIDESHVTIPQIGAMYRGDRSRKETL
VSYGFRLPSALDNRPLRFDEWERLAPQMIFVSATPGNYEADHQGQVVEQVVRPTGLVDPD
IEVLPASTQVDDLLGQIHDRVERNERVLVTTLTKRMAEDLTDFLLDKGVRVRYLHSDVET
VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA
ARNVRGKAILYADKITGSMQRAMDETERRRNKQISYNEEHGVIPRGLDKKVADIMEGARV
PGSKKGASQRRVAETASSYNVEAEARTPQEYAKMLQKLETAMYEAARNLEFEKAAQLRDQ
LKELKEKGLQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagtttcagcttaaagcgaattatcaaccggcgggcgatcagcctggcgccatc
gccgggttagtggatggactgcgcgacggcctgctgcatcagacattgctgggggttacc
ggttcagggaaaacgttcaccatggccaacgtgattgcggaaatgcagcgccccgctatg
gtgatggctcacaacaaaaccctggcggcgcagctgtacggagagttcaaagagtttttc
cctgataacgcagtggaatactttgtttcctactacgattactatcagccggaagcctat
gtaccgtcttccgacacctatatcgaaaaagattcctccattaacgaccacattgagcaa
atgcgtctgtcggcgaccaaagcgctgatggagcgtaaagatgtggtgatcgtcgccact
gtctctgcgatctatggtttgggcgatccgcagtcctacaaaaagatgatgttgcatctg
gatcggggcgacaaggttgatcagcgttctctgctgcgccgtttggctgaattgcaatac
acccgtaatgacttggagttacaccgtgctaactaccgggtgagaggcgacgttattgat
gtatttcctgcggaatctgagtcagatgcgctgcgcatcgagctgtttgacgacgaaatc
gaatcgctgtcctggtttgatcctttaaccggtgaggtttaccggcgcgtaccgcgggcg
acgatctatccgaaaactcactacgccacgccgcgtcaggtcatactggatgcgacggaa
cagataaagacggagctgcaggagcgtttgcagcagtttcgcggctccagcaaattgctg
gaggctcagcggttggaagagcgcaccagatatgatctggagatgatgtacgagctgggc
tattgcaacggcatcgagaattactctcggtatctctctggtcgtcaggcgggagaacca
ccgcctactttatttgactacctgccttctgatgcgctgctgtttattgacgagtctcac
gtaacgattccacagatcggcgccatgtatcgcggggaccgttcccgtaaggaaacattg
gtgtcttacgggttccgattgccgtccgcgttggataatcgtcctttacgctttgacgag
tgggagcgtctggcgccacagatgatttttgtgtcggcgacgcccggaaactacgaggcg
gaccatcaaggacaagtagtggagcaggtggtgcgtcccacaggtctggttgatccggac
attgaggtgctgccggcgtctactcaggttgatgatctgttagggcagatccatgatcgg
gtggagcgtaacgagcgggtgctggtgaccactttgaccaagagaatggcggaagatctg
acggacttcctgttggacaaaggcgttcgtgtgcgttacctgcactctgatgtggagacc
gtagagcgggttgaaatcattcgagatttgcgtctgggcgagtttgacgtactggtgggc
atcaacctgctgcgtgaaggtttggacatgccggaagtttccctggtcgccattttggac
gcggacaaagaaggtttcctgcgttcggatcgttcactgatccagactatcggccgggcg
gcgcggaacgtacgcggcaaagcgatcctgtatgcggataaaatcaccggctccatgcag
cgagcgatggatgaaaccgagcggcggcgtaataaacagatcagctataacgaagaacac
ggcgtcattccgcgcggcctggacaaaaaagtcgccgacattatggaaggtgcgcgagtg
ccgggctccaagaaaggcgcctcgcagcgcagggtggcggaaacggcctcttcctataat
gtggaagctgaagcgagaaccccgcaagaatacgcgaagatgctgcagaagctggaaacc
gctatgtacgaagccgcccgcaatctggaatttgaaaaagcggcgcagttgcgagatcaa
ttaaaagaactgaaagaaaaaggcctgcaataa
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