KEGG   Helicobacter pylori HUP-B14: HPB14_05935
Entry
HPB14_05935       CDS       T02035                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hcn  Helicobacter pylori HUP-B14
Pathway
hcn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPB14_05935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcn03019]
    HPB14_05935
   03016 Transfer RNA biogenesis [BR:hcn03016]
    HPB14_05935
Enzymes [BR:hcn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPB14_05935
Messenger RNA biogenesis [BR:hcn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPB14_05935
Transfer RNA biogenesis [BR:hcn03016]
 Prokaryotic type
  tRNA degradation factors
   HPB14_05935
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: AFI07863
LinkDB
Position
complement(1246356..1248290)
AA seq 644 aa
MQGFLRSLFFGVKKIPKPFAPLVEKGVLKEALELKKDRYFLKEGFDIGKVEKVKDKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALLNADHTMIAYLAKKNN
QIVAIPFKEPFKKPVSLKHSQKSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRVKDFSQDCLDLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQKK
RVLFVAVADVSEFVPKHSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEMALKL
KKERLKKGLNFNSFENKLYLNKEGRIEKIETEKESDAHTLIEEAMLLANQSSAKLLDEHF
HNKGIYRTHKEPSLEQQKRLYAKLFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPLQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCSELNALQKKAALIERDFIKRKFARLALELLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLIKTNKVFKPLEKVRVTITHADLVLGQVRGEITERIKEHVS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctagtagaaaagggcgttttaaaagaagcgcttgaattgaaaaaggatcgctatttt
ttaaaagaaggctttgatataggcaaagttgaaaaagtaaaagataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaaaaaaataac
cagattgtggctatcccttttaaagagccttttaaaaaacctgtttctttaaagcacagc
caaaaatccttactagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacagggttaaggatttttcacaagattgcttggatttagcgcaacattac
gcgcaactcaaagcgagcgattttaaagacaggatcaattattctcatatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgaccaaaaaaaa
agggttttgtttgtggcggtcgctgatgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctagaattaggggctttagcgtgtatttccctaacagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctctagataatttgaaaaatgcccgattatctcaaggcgtcatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcgctaatcaaagc
tctttagataaagatttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggcttaatttcaattcctttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacagaaaaagaaagcgatgcgcacaccctc
atagaagaagccatgctcttagccaaccaatctagtgcgaagttattagatgagcatttt
cacaataaggggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctt
tacgctaagctttttgattatgagattgtgcgccctaaaaacatgggtttttttcctttt
ttagagcatgccttaaagatagccaaagaaaagagtatagaaagagaagtttcacgctta
atcatcaagtctcaaaatttagccctttatagccccctgcaagaaagccattttggtttg
gggtttgctagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggttgctcgtatttgttagaa
gaaacgcctgagttgtgttctgagttgaacgctttgcaaaaaaaggccgctttgattgaa
agagatttcatcaaacgcaaattcgctcgcttggctttagaacttttagaaaaagaattt
ctgggcgtggttttagaggttaaagattgggtagtggtggggttaaaagaatttataggg
cttaaagttttaatcaaaacgaacaaggtttttaagccgttagaaaaggtgcgcgttaca
atcacgcatgcggatttggttttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

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