Helicobacter pylori HUP-B14: HPB14_05935
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Entry
HPB14_05935 CDS
T02035
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB14_05935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcn03019
]
HPB14_05935
03016 Transfer RNA biogenesis [BR:
hcn03016
]
HPB14_05935
Enzymes [BR:
hcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPB14_05935
Messenger RNA biogenesis [BR:
hcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPB14_05935
Transfer RNA biogenesis [BR:
hcn03016
]
Prokaryotic type
tRNA degradation factors
HPB14_05935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AFI07863
LinkDB
All DBs
Position
complement(1246356..1248290)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLVEKGVLKEALELKKDRYFLKEGFDIGKVEKVKDKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALLNADHTMIAYLAKKNN
QIVAIPFKEPFKKPVSLKHSQKSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRVKDFSQDCLDLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQKK
RVLFVAVADVSEFVPKHSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEMALKL
KKERLKKGLNFNSFENKLYLNKEGRIEKIETEKESDAHTLIEEAMLLANQSSAKLLDEHF
HNKGIYRTHKEPSLEQQKRLYAKLFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPLQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCSELNALQKKAALIERDFIKRKFARLALELLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLIKTNKVFKPLEKVRVTITHADLVLGQVRGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctagtagaaaagggcgttttaaaagaagcgcttgaattgaaaaaggatcgctatttt
ttaaaagaaggctttgatataggcaaagttgaaaaagtaaaagataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaaaaaaataac
cagattgtggctatcccttttaaagagccttttaaaaaacctgtttctttaaagcacagc
caaaaatccttactagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacagggttaaggatttttcacaagattgcttggatttagcgcaacattac
gcgcaactcaaagcgagcgattttaaagacaggatcaattattctcatatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgaccaaaaaaaa
agggttttgtttgtggcggtcgctgatgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctagaattaggggctttagcgtgtatttccctaacagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctctagataatttgaaaaatgcccgattatctcaaggcgtcatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcgctaatcaaagc
tctttagataaagatttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggcttaatttcaattcctttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacagaaaaagaaagcgatgcgcacaccctc
atagaagaagccatgctcttagccaaccaatctagtgcgaagttattagatgagcatttt
cacaataaggggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctt
tacgctaagctttttgattatgagattgtgcgccctaaaaacatgggtttttttcctttt
ttagagcatgccttaaagatagccaaagaaaagagtatagaaagagaagtttcacgctta
atcatcaagtctcaaaatttagccctttatagccccctgcaagaaagccattttggtttg
gggtttgctagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggttgctcgtatttgttagaa
gaaacgcctgagttgtgttctgagttgaacgctttgcaaaaaaaggccgctttgattgaa
agagatttcatcaaacgcaaattcgctcgcttggctttagaacttttagaaaaagaattt
ctgggcgtggttttagaggttaaagattgggtagtggtggggttaaaagaatttataggg
cttaaagttttaatcaaaacgaacaaggtttttaagccgttagaaaaggtgcgcgttaca
atcacgcatgcggatttggttttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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