KEGG   Halomonas chromatireducens: LOKO_00656Help
Entry
LOKO_00656        CDS       T04292                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hco  Halomonas chromatireducens
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hco00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    LOKO_00656
Enzymes [BR:hco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LOKO_00656
DNA repair and recombination proteins [BR:hco03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LOKO_00656
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(683193..685748)
Genome map
AA seq 851 aa AA seqDB search
MKKLKEYHRKRDFENSLEPAGEEGATSATGKLYIMHKHAASHDHFDLRLEQDGVLRSWAL
PKGPSLVPGEKRLAVEVEDHPLEYGEFEGVIPEKSYGGGTVMLWDCGAWQIKGKSTKDRL
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLMIKRSDDNQRMDDSLTVDLDTSIASGRSM
EEIADDRDHTWCTTNDTDETLDGDPLDPKALRGARKARLPRDVKPQLATLAREVPTKGNW
IHEIKLDGYRLLARLEAGNVRLITRNGKDWTRRFREIAEALEPLAVDSALLDGEVVAMGR
DGVSRFSELQEALSSGRTSALVYQVFDLPYFQGHDLASVTLLERKRTLEALLADAGMKEG
KIRYSDHLDTQGKAFHERACQMGLEGIICKRADSRYQQKRSRDWLKVKCVSHEEFVVGGY
TEPGGSRKGFGSLLMGAYGKEGLVYAGRVGTGFSHRLLERLGATLQELEVKRSPFHGGVP
DSRSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPKEIRMTPIKEMAAEGAPEE
NTKSAEPAPRKRKGETSLLGVRITSPDRILFPEQGLTKLDLARFYDQIHEWVLPHLARRP
LSLVRCPQGRDDECFFQKHPQRAIPSSVPRVDVPEKKGSAEYVYVESAADLVGLVQAGAL
EIHPWGSRIDHLEQPDNLVFDLDPDEGIAWKEILRVARTLRERIESLGLTPFVRTTGGKG
LHLVVPIEPAAEWDQAKAFAKGVAEAHARDDPQRLTTNMSKAKRKGRIFIDYLRNGRGAT
AVASYTVRARKGAPVAVPIRWDELNAALRADRYNVENLRRRLSALREDPWTGFAEGARPL
DADLLKRVGVK
NT seq 2556 nt NT seq  +upstreamnt  +downstreamnt
atgaagaaactcaaggagtaccaccgcaagcgagacttcgagaacagcctcgagcctgcc
ggcgaggaaggagcgacttcggcgacaggcaagctttacatcatgcacaagcacgcggcg
agccatgatcactttgacctgcgcctggagcaggacggcgtgctgcgcagctgggcgcta
cccaaggggccgagccttgtgcccggtgagaagcgccttgccgtagaggtcgaagaccat
cctctggagtatggcgagttcgaaggcgtgatacctgagaaatcctacggcggcggcacc
gtcatgctgtgggattgcggcgcttggcagatcaaaggcaagtcgaccaaggaccgcctc
gacatcgagctcgatggcgaacggctcaagggcagttggaccctgacccgcatgagcggc
aagcgccaggacaagcatggacgcaactggctgatgatcaagcgcagcgatgacaaccag
cgcatggacgattcgctcacggtcgatctcgacaccagcatcgccagcggacgcagcatg
gaggagatcgccgacgatcgagatcacacctggtgtacgaccaacgacacggacgagact
ctcgacggcgatccactcgacccgaaggcccttcgcggcgcccgcaaagccaggcttccc
cgcgacgtcaagcctcaattggccacccttgcccgcgaagtgcccaccaagggcaactgg
attcacgagatcaagctcgacggctaccgtctgcttgcccgcctggaagcagggaatgtg
agattgatcacccgcaacggcaaggattggacccgccgctttcgcgaaatcgcggaggcg
ctggaacctctggcggtggattcggcgctgctcgatggcgaagtggtggccatgggcagg
gatggcgtgagccgcttcagcgaactccaggaggctctctccagcggccgcacgtccgcc
ctcgtctaccaggtctttgatctcccttatttccagggccatgacctggcaagcgttacc
ctgctggagcgcaagcgcaccctggaggcgctgctcgccgatgccggcatgaaggaaggc
aagattcgctactccgaccacctcgacacccagggcaaggcctttcacgagcgcgcctgc
cagatggggctcgaaggcatcatctgcaagcgcgccgacagccgataccagcagaaacgc
agccgcgactggctcaaggtcaagtgcgtcagccatgaggagttcgttgtcggcggctat
accgagcccggcggctcacgcaagggctttggctcgctgctgatgggggcctacggcaag
gaggggctggtctacgccggacgcgtggggaccggcttcagccatcggctgctggaaaga
cttggcgccacactgcaggagctggaagtcaaacgctccccctttcatggcggtgtgccg
gatagccgctccgtacactgggtgcgacccgagctggtgatcgaggtggagtttaccgag
cgcactcgtgacggccgcctgcgccatccggcctttcgcggcctgcgtgaggaccgcaac
ccgaaggagatccgcatgaccccgatcaaggagatggctgccgaaggcgctccggaggag
aacacgaagtcggccgagccagcccctcgcaagcgcaagggcgagacctcgttgctcggg
gtgcgcatcaccagtcccgaccggattctgtttcccgagcagggcctgaccaagctcgac
ctggcgcgattctacgaccagatccacgagtgggtcctgccccacctggcccggaggccg
ctctccctggtgcgctgcccccagggacgcgacgacgagtgcttctttcagaagcatccc
cagcgagccataccgtcaagcgtaccccgtgtcgatgtgccggaaaaaaagggcagcgct
gaatatgtctatgtcgagtcggccgcggacctggtgggcctggtgcaggccggcgcgctg
gagatccacccctggggcagtcgcatcgaccatctcgaacagcccgacaatctggtgttc
gatctcgaccccgatgaaggcatcgcctggaaggagattctgcgcgtggcccgcaccctg
cgcgagcgcatcgaatcgctgggtctcacaccctttgtgcgcactaccgggggcaaggga
ctgcatctagtggtgccgatcgagcccgccgccgagtgggaccaggccaaggccttcgcc
aagggcgtagccgaggcccacgccagggatgatccccagcggctgaccaccaacatgtcc
aaggccaagcgtaagggtcgcatcttcatcgattacctgcgcaacggccgcggcgcaacg
gccgtcgcctcctacacggtacgtgcacgcaagggggcgccggtcgccgtgccgatccgt
tgggacgaactcaacgctgcgctgcgcgccgaccgttacaacgtcgaaaacctgcgccga
cggctctcggcgctgcgcgaggacccctggacgggcttcgccgagggggctcgcccactg
gatgccgacctgctcaagcgcgtcggcgtgaaatag

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