Halomonas elongata: HELO_3855
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Entry
HELO_3855 CDS
T01311
Name
(GenBank) DHH/RecJ family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hel
Halomonas elongata
Pathway
hel03410
Base excision repair
hel03430
Mismatch repair
hel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HELO_3855
03430 Mismatch repair
HELO_3855
03440 Homologous recombination
HELO_3855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hel03400
]
HELO_3855
DNA repair and recombination proteins [BR:
hel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HELO_3855
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HELO_3855
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HELO_3855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
CBV43739
UniProt:
E1V967
LinkDB
All DBs
Position
complement(3350148..3351959)
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AA seq
603 aa
AA seq
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MNAPVDLHESLKPRILPRPRDAAVEQRALAEGLTPLQARILAGRLGGYTGELAPLVAPSL
RYLAHPERLQDGRRAAERIARAVTEGEHIGILTDYDVDGITSHVVIRRTLNELFGIPENR
LHSLIGHRIHDGYGISLPLVERTLSLSPRPSLVITADCGSSDEPRIARLREAGIDVVVSD
HHALPTEGPPASAFATVNPTRDDCTYPDPTIAGCMVAWLVMSLTRSVLIEWGVLEPATPK
LSPWLSYVALGTVADCVSLGGSAANRAVVAHGLTLINRMEAACWRTMAQRLGDDSVPFDA
ETLAFQMGPRINARSRLDDPYAALHFMLAADDATAARHLETLDQDNQSRKAIEAEMTERA
RGLAMAELEAGAPLLVVLLEEGHPGVQGIVASRLVQAFGRPALVLTPAAQPGMLTGSGRS
IEALHLRDALQRAYELAPASLPRFGGHRGAAGVGVPREAFDDFRQALLQAVSEQLGETEL
GPRVFTDGELEADQLALETLDELEALGPFGREFDAPLFEGVLRAESLRTVGADGSHLMLE
LSSGATSIRAIWFRALTPGEMPAFDAGDLLRCAYKLNRNRWRGRESLQLIIEHAEPTEAG
RGK
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcccctgtcgatctgcatgaatccctcaagccgcgtattctgcctcgcccgcgg
gatgccgccgtggagcagcgcgccctggccgaggggctgacgccgttgcaggcgcggatc
ctggccggtcgcctgggtggctacacgggcgaactggcgccgctggtggcgccgagcctg
cgttacctggcgcaccccgaacgcctccaggacgggcgccgtgccgccgaacgcatcgcc
cgggcggtgaccgagggcgagcacatcggcatcctcaccgactatgacgtcgatggcatc
acctcgcatgtggtgattcggcggacgctcaacgagctgttcggcattcccgagaaccgc
ctgcacagcctgatcggtcaccggattcacgatggctacggcatcagcctgccgttggtg
gagcgcaccctgtcgctctcgccgcgcccgagcctggtgatcaccgccgactgcggcagc
agcgacgagccgcgcatcgccaggttgcgcgaggccggcatcgacgtggtggtcagcgat
caccatgccctgccgacggaagggccgccggcctcggccttcgccaccgtgaatcccacc
cgcgacgactgcacctaccccgacccgaccatcgccggctgcatggtcgcctggctggtc
atgtcgctgacccgcagcgtgctgatcgaatggggcgtgctcgaaccggccacgcccaag
ctgtcgccctggctctcctatgtggcgctgggtacggtggcggactgcgtctcgctgggc
ggcagtgcggccaatcgagccgtggtcgcccatggcctgacgctgatcaatcgcatggag
gcggcctgctggcggaccatggcccagcggctgggggacgacagcgtgcccttcgacgcc
gagaccctggccttccagatgggcccgaggatcaacgcccgttcgcggctcgacgatccc
tatgccgcgctgcacttcatgctggcggcggacgacgccacggcggcgcgtcacttggaa
acgctggatcaggacaatcagtcgcgcaaggccatcgaggcggagatgaccgaacgcgcc
cgcggcctggccatggccgagctggaggccggggcaccgctactggtggtgctgctcgag
gaaggccatccgggcgtgcagggcatcgtcgcctcgcggctggtccaggccttcgggcga
cccgccctggtgctgacgccggccgcgcaacccggaatgctcaccggctcagggcgctcc
atcgaggcgttgcacctgcgcgatgcactgcaacgggcttacgagctggcaccggcatcg
ctgccgcgcttcggcgggcatcggggcgcggccggtgtcggcgtgccccgggaagctttt
gacgactttcgtcaggcgctgctccaggcggtcagcgagcagttgggagaaacggagctg
gggccgcgagtcttcaccgacggtgaactcgaggccgatcaactggccctggagacgctg
gacgaactggaagcgctcggtccctttggccgtgagttcgacgcaccgcttttcgaaggc
gtgctgcgggcggagagcctgcgtaccgtgggtgccgatggcagccacctgatgctcgag
ctatccagcggcgccaccagcatcagggcgatctggttccgtgccctgacgcctggcgag
atgccggccttcgatgccggcgacctgctgcgctgcgcctacaagctcaaccgcaaccgc
tggcgggggcgggagtcgttgcaactgatcatcgagcatgcggagcccactgaagcagga
agagggaagtag
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