Helicobacter pylori UM298: K748_02345
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Entry
K748_02345 CDS
T02757
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hem
Helicobacter pylori UM298
Pathway
hem03410
Base excision repair
hem03430
Mismatch repair
hem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K748_02345
03430 Mismatch repair
K748_02345
03440 Homologous recombination
K748_02345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hem03400
]
K748_02345
DNA repair and recombination proteins [BR:
hem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K748_02345
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K748_02345
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K748_02345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AGR62318
LinkDB
All DBs
Position
215256..216806
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAVLKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAIGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagctgtgctcaaaatcata
gaagccatgcgtgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gtaatccctaatcgtttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataatgggattagcgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgcttagcgggcgtggcgactattgctgac
atgatgcctttgacttttttcaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatagggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttagtatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggcgaaaagattatcgtcgcttttaaggaggat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagtgggcgcagctcttcaaac
attgatctcattgatgctttgaatggggtttcttctttgttgctcggctatggagggcat
aggcaagcttgcggattgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagatattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgagtgcgatttttagcgtggaa
ttagatgaatattctaatgagcctaaaatgtttgttaaaagtttgttgtag
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