Helicobacter pylori SNT49: HPSNT_02830
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Entry
HPSNT_02830 CDS
T01916
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hen
Helicobacter pylori SNT49
Pathway
hen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSNT_02830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hen03021
]
HPSNT_02830 (rho)
03019 Messenger RNA biogenesis [BR:
hen03019
]
HPSNT_02830 (rho)
Transcription machinery [BR:
hen03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPSNT_02830 (rho)
Messenger RNA biogenesis [BR:
hen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPSNT_02830 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
ATPase_2
AAA_22
AAA_18
AAA_28
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEN16725
UniProt:
G2ME44
LinkDB
All DBs
Position
complement(576945..578261)
Genome browser
AA seq
438 aa
AA seq
DB search
MNENTPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacacgcctacgcacaaaagttcgcacaaagtcaaaacgcacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaaccctcaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccggaattttagagatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagacgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaaccccc
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcgccgccaagg
actgggaaaacggagctgatgaaagaactcgctcaaggcatcacttctaaccaccctgaa
gtggagctgatcatccttttagtggatgagcgccctgaagaagttacggacatgcaacga
agcgttaagggtcaggtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgaattagttttagaaagggctaaaagacgagtggaaatgggcaaagatgtggtg
gttttattagattcaatcactcgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtggaggcgtggatgcgaacgccttgcacaggcccaaacgctttttt
ggggctgcaaggaatattgaagaaggcgggagcttgacgattatcgctaccgcgttgatt
gaaacgggatccagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcagacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatatcttgcttggcaaagaccgcttaactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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