Helicobacter pylori Rif1: C695_07580
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Entry
C695_07580 CDS
T02317
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
her
Helicobacter pylori Rif1
Pathway
her03030
DNA replication
her03430
Mismatch repair
her03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C695_07580 (dnaE)
03430 Mismatch repair
C695_07580 (dnaE)
03440 Homologous recombination
C695_07580 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
her03032
]
C695_07580 (dnaE)
03400 DNA repair and recombination proteins [BR:
her03400
]
C695_07580 (dnaE)
Enzymes [BR:
her01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C695_07580 (dnaE)
DNA replication proteins [BR:
her03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C695_07580 (dnaE)
DNA repair and recombination proteins [BR:
her03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C695_07580 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AFV44278
LinkDB
All DBs
Position
complement(1528925..1532560)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLKEHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKHDQYKERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
ISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVVRLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPPMEMLA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagcttttacgcatttgcacttgcacacagaatattcgcttttagac
ggggcgaacaagattaaaattctagccaaacgcgttaaagaattgggcatgaaaagcgtg
agcgtaactgatcatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgatgacaacctttct
agcaaagaaaccaagcagcgtttccatttatgcttgttcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaggggttttattatttcccacgc
atcaataaaaagcttctaaaagagcattctaaaggcattatcgcttctagcgcatgcttg
caaggggaagtcaattaccatttgaataccaataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagctaaaaaaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagagatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgccaaggctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccccgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccccccaagc
ttcaaattcactaaagcttacgctcaaaatgaggggctgaattttgaagatgacgcttct
tattttgcctataaggctagagaaggcttgaaagagcgcttagttttagtaccaaaagaa
aagcatgatcaatataaagagcgcctagaaaaagaaattgaagtcattacgaacatgaaa
ttcccagggtatatgctgattgtgtgggattttatccgttatgctaaggaaatgggcatt
cctgtagggcctggtagggggagtgcggccgggagcttggtggcttttgctttaaaaatc
acggatattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccccgaaaga
atcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggcacaagtcatcacttttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccctataaagaagcc
gatgattttgccaaactcatacccaaccgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagtttatcgagggagcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttaaaccgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttgtttgcctctgaaaagaccggcggtatcgttacgcaatattccatgaagtat
ttggagccggtggatttgatcaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacacaacacaaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatcttc
cagattgaatccgggatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattatcgccattatcgcgctaggcagaccagggcctatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcgttgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaggtgatgcaaatcgtg
caaactatcggcggtttcagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcagatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggtcagggctttagaaattgaagtgatgcctccg
catatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgag
ttagaaaagaaaatcgtgtttggtttgggagcgattaaaggagttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattataagagtttggaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattagtgaaatcagggagc
ttggataatttaggctacactagaaaaaccatgctcgctaacttggatctgatctgtgat
gccgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaattctctttttgga
gccatggagggcggaaccaaagagcaggttgttttggacatgattgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgaaactttaggcatccatgtttcaggcaac
cctttagacgagtttaaagaagaaattaagggttttaaaaatttagtcaaaagcattgat
attgaagagttagaaatcggctcgcaagcttatttgctcggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttatggcatagcggacattttggatcgatac
ggcaagtttgaactcatgctttttgaaaagcaattaaacgccttagaagagttggacatt
aataagcctttagtgttcaaatgcaagattgaagagcaagaagaagtggtgcgattgagg
ctttttgaaatcttggatctagagagcgctagagaggttaaaatccctaaagcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatcccccccatggaaatgcttgcc
tctagttcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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