Helicobacter pylori SouthAfrica7: HPSA_01605
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Entry
HPSA_01605 CDS
T01921
Name
(GenBank) outer membrane protein HopD
Organism
hes
Helicobacter pylori SouthAfrica7
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SabA_adhesion
HP_OMP
Motif
Other DBs
NCBI-ProteinID:
ADU84343
UniProt:
E8QV56
LinkDB
All DBs
Position
complement(327060..329123)
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AA seq
687 aa
AA seq
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MRKTIFSLALSSLLVSTLSAEDDGFYMSAGYQIGEAAQMVKNTKGIQQLSDSYEKLSNVL
TNYSVLNTLIQQSSDPNAINNARTNLSASAKNLLDEKTNSPAYQAVLLALNAAAGLWQVM
SYAISGCGPGTDSSKNGGVQTFENTPSNQWGGTTITCGNEKYEPGQFSIISTADYATINK
AYQIIQKAFGSSGKEIPVLSNTNTELKFTINESGDNGNKEVDTKNNAQILLEQANTIITT
LNSACPWINNGGAGPASSGSLWEGINKGNGSACGIFKNEISAIQSMIANAQEAVAQAKIV
TENAQSGTIDKDNKPFNPFNDASFAQGMLANATAQTEILNRVQQVVNDFDKIPKDFVKDS
LGVCNETQNGHLRGTPSGTVTSNTWGAGCAYVGETITNLKNSIAHFGAQAEQIQQAEDLA
YTLANFSSQYKKLGDTYNSITTAISSIPNAQAIQNVVSKKNNPYSPQGIQENFYLNQNTY
NQVQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRRWGARYYGFFDYN
HAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLN
SEYVNLATVNNVYNAKMNVANFQFLFNMGLRMNLARPKKKDSDHAAQHGIELGLKIPTIN
TNYYSFMGAELKYRRLYSVYLNYVFAY
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaccatcttttcactcgctctaagctcgcttttagtttccactttaagcgct
gaagacgacggcttttacatgagtgcaggctatcaaatcggtgaagccgctcaaatggtg
aaaaacaccaaaggcattcaacagctttcagacagctatgaaaaattaagcaatgtttta
accaattatagcgtcctaaatactttaatccagcaatctagcgaccccaatgccatcaat
aacgcaaggactaatttgagtgcaagcgcgaagaatttgctagatgaaaaaaccaactcc
ccggcgtatcaagcggtgcttttagccttgaatgcggcagcgggtttgtggcaagtgatg
agctatgcgatcagtggttgtggtcctggcacggacagcagcaaaaatggaggcgttcaa
acctttgaaaacacgccatcaaatcaatggggaggcactaccattacttgtggtaatgaa
aaatatgaaccaggacaattcagcattatatccaccgcagattatgcaaccatcaataaa
gcttatcaaatcattcaaaaagcttttgggagcagtgggaaggaaatcccggtcttaagc
aacaccaacacagagcttaaatttacaatcaacgaaagtggggacaatggaaataaagaa
gttgatacgaaaaataacgctcaaattcttttagaacaagccaacacgattataaccact
cttaatagtgcatgcccatggataaataatggtggtgcaggtcctgcaagtagtggtagt
ttatgggaaggaatcaataaaggcaatggtagcgcgtgtgggatttttaaaaatgaaatc
agcgcgatccaaagcatgatcgctaacgcccaagaagctgtcgcgcaagccaagattgtt
actgaaaacgcgcaatcagggacaatagacaaagacaacaagcctttcaaccctttcaat
gatgcaagtttcgctcaaggcatgctcgctaacgctacagcgcaaacagagattttaaac
cgagtccaacaagtggtgaatgattttgacaaaattcctaaagattttgtaaaagactct
ttaggagtgtgtaatgaaacgcaaaatggtcatctccgtggcacaccatccggcacggtt
acttctaacacttggggagccggttgtgcgtatgtgggagaaacgataacaaatcttaaa
aacagcatcgcacattttggcgctcaagccgaacaaatccagcaagccgaagatctcgcc
tacactttagcaaacttcagcagccaatacaaaaagctaggggacacctacaacagcatc
actaccgccatttcaagtatccctaacgctcaagcgatccaaaatgtggtgagcaaaaag
aacaacccttatagcccgcaaggcatacaagaaaacttctaccttaaccaaaacacttat
aaccaagtccaaaccatcaatcaagaattagggcgtaacccctttaggaaagtaggcatc
gtcagttctcaaaccaacaacggcgcgatgaatgggattggcattcaagtgggctacaaa
caattctttggccaaaaaagaagatggggtgcaaggtattacggcttttttgattacaac
catgccttcatcaaatccagctttttcaattcggcttctgatgtatggacttatggcttt
ggagcggacgctctctataacttcatcaacgacaaagccaccaatttcttaggcaagaac
aacaagctttctgtggggctttttggcgggattgcgttagccgggacttcatggcttaat
tcggagtatgtgaatttagcgaccgtgaataatgtctataacgctaaaatgaatgtcgct
aacttccaattcttattcaacatgggattaagaatgaatctcgctagacctaagaaaaaa
gacagcgatcatgcggctcaacatgggattgaactagggcttaaaatccccaccatcaac
accaactactattcctttatgggcgctgagcttaaataccgcagactctatagcgtgtat
ctcaactatgtgtttgcgtattaa
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