Helicobacter pylori F57: HPF57_0398
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Entry
HPF57_0398 CDS
T01912
Symbol
recJ
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hex
Helicobacter pylori F57
Pathway
hex03410
Base excision repair
hex03430
Mismatch repair
hex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPF57_0398 (recJ)
03430 Mismatch repair
HPF57_0398 (recJ)
03440 Homologous recombination
HPF57_0398 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hex03400
]
HPF57_0398 (recJ)
DNA repair and recombination proteins [BR:
hex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPF57_0398 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPF57_0398 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPF57_0398 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
BAJ59472
UniProt:
E6NQQ6
LinkDB
All DBs
Position
complement(399611..401161)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSITPLINSAGRIQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVDATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIKEAIY
FNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagatttgaaaaaagccgcactcaaaatcata
gaagccatgcgtgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gcaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataatgggattagcgcctttgaagccgcgcgattt
tgcaaagaaaaaaactacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttagtggcgttttatttgtgctatggcatccaccagcttctagga
aaagaaaaaagccattctagcgagttgttgtgcttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatctttaggggcaatggggtttttgcgccaaagagaagtttttagaaaacgctcc
ttaaaagcgagcgatatttcttttagtatcactcccttaatcaactccgcagggcgcata
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcgtgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggacgccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaaggaagtggtcgcagctcttcaaat
attgatttgattgatgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcgggttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaaatgctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagatattgacagagagcttttagagattatagaagcgggtgaaccttatgggcaa
gaaaacccagaaccgctctttcaagcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcatcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgagtgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag
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