Helicobacter pylori Shi417: HPSH417_07425
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Entry
HPSH417_07425 CDS
T02039
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPSH417_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhr03400
]
HPSH417_07425
Enzymes [BR:
hhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HPSH417_07425
DNA repair and recombination proteins [BR:
hhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HPSH417_07425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
T2SSM_b
Motif
Other DBs
NCBI-ProteinID:
AFH98601
LinkDB
All DBs
Position
complement(1533288..1534040)
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AA seq
250 aa
AA seq
DB search
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCAIKK
GYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRM
SWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNA
GFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALIYKDILGS
DHCPVGLELV
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgatttcatggaatgtgaacgggttaagagcttgcatgactaagggctttatg
gattttttcaatagcgttgatgcggatgttttttgcattcaagaatctaaaatgcaacaa
gatcaaaacacctttgaatttaaagggtattttgatttttggaattgcgcgattaaaaag
ggctattctggggtggtaactttcactaaaaaagagcctttaagcgtgagctatggtatc
aatatagaagagcatgacaaagaggggcgcgtggtaacttgcgaatttgagttattttat
ttagtgaatgtttatgtccctaattcccaacaagccctatctaggcttagttatcgcatg
agttgggaagtggaatttagaaaatttttaaaagctttagagttaaaaaaacctgtcatt
gtgtgcggggatttgaatgtagctcacaatgaaattgatttagaaaaccctaaaacaaac
cgaaaaaatgcgggctttagcgatgaagagagagggaaattcaacgagcttttgaacgcc
ggttttattgacactttccgttatttttaccctaacaaagaaaaggcttacacctggtgg
agttacatgcaacaagcaagggataaaaacattggttggcgtattgattattttttatgc
tctcatcctttaaaaacgcgcttaaaagacgctttaatctataaagatattttagggagc
gatcattgcccggtggggttggaattagtttaa
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