Haliscomenobacter hydrossis: Halhy_5642
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Entry
Halhy_5642 CDS
T01491
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halhy_5642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhy03019
]
Halhy_5642
03009 Ribosome biogenesis [BR:
hhy03009
]
Halhy_5642
Enzymes [BR:
hhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Halhy_5642
Messenger RNA biogenesis [BR:
hhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Halhy_5642
Ribosome biogenesis [BR:
hhy03009
]
Prokaryotic type
rRNA helicases
Halhy_5642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
AAA_19
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEE53465
UniProt:
F4KUR2
LinkDB
All DBs
Position
7201918..7203468
Genome browser
AA seq
516 aa
AA seq
DB search
MKQLNFSELALSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGI
PLLESIDCSTREVAAIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKEL
KAGPQVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQ
TVLFSATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQAKEAVIARLIEY
YDLQRVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVLVAT
DVAARGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLRDIE
DFSKVRIDRHNVPTVQDLAKRQQAKLWEKVTETLAEGGDLEPYEILARDFCKNNGLDSRQ
LAVALVKMAMPDVNAVEIPNLNAERERRPASVREGGEREFSRNSNGGGYNGSRGGNSGGG
GYKSGPPRKKEYGSYKGEGFGGKKPGGKKKFSKAIA
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattgaatttttctgaactggcactgagccaggaagtgcaaagcgcgatcaat
gacatgggctttgctgaggctacgcctattcaatctgaggccattcctcatttgctcaat
gggaaagacctgattggtcaagctcaaacaggtacgggtaaaaccgcagcctttggtatt
ccacttttggaatccatcgattgtagcacccgtgaggtagccgcaattgtattgtgtcct
actcgtgaattggcggtacaagtagctgaagagctgcgcaaactggccaagtacaaaaaa
ggattgttcatctctacgatctatggtggcgattccattcaacggcagttgaaggaattg
aaagccggcccacaagtagtggtgggtactccaggacgcgtcatggatcaccttcagcgc
aaaaccttgcgtttggatcacatccaaatggcggtactggatgaagcggacgagatgctc
aacatgggttttcgggaagacatcgaaaatgtgttgaaccaaatgcccgaaacgcgccaa
acagttttgttctcggcaaccatgccgcggccaattctcgaaattgccaagcgtttccaa
aagagcccaatccacgttaaagtggtgaaggaagaattgaccaacgcctcgatcgatcag
atctactacgatattcccgtacaagccaaagaagcggtgattgctcgcttgatcgaatat
tatgacctgcaacgcgtcatcgtgttcgccaacatgaaaaaaaccgttgatgaccttacc
gagggcctcaatcttttgggcatcagtgccaaagccatccacggtgacttgaaccaaaac
caacgcaacgcggtactcactgctttccgcggtggagcggtgaatgtgctggtggctacg
gatgtagcggctcggggcatcgatgtgagctcagtagatggcgtattcaactacgacctg
ccttacgacgcagaatactatgtacaccgcattggccgcaccggtcgtgccggtaagttg
ggcaaatcgttcagctttgttaccggaagaaacgatcgttaccgcttgcgcgacatcgaa
gatttcagcaaggtgcgcatcgacagacacaatgtacccaccgtacaagatctggccaag
cgccaacaggctaaactttgggagaaagttaccgaaacactggccgaaggtggagacttg
gaaccatacgaaatcctggctcgcgacttctgcaaaaacaatggattggacagccgccaa
ctggcagttgccctggtcaaaatggccatgccagacgtcaatgcagtagaaattcccaac
ttgaacgccgagcgtgaaagacgcccagcatcagtgagagaaggtggcgagcgcgagttc
agccgcaatagcaatggcggtggctacaatggatcgagaggcggaaatagtggtggcggt
ggctacaagtcaggcccacctagaaaaaaagaatacggctcatacaagggagaaggcttt
ggcggtaaaaagccaggcggaaagaagaaattctccaaggcgatagcttaa
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