Hydra vulgaris: 100206246
Entry
100206246 CDS
T01080
Definition
(RefSeq) DNA ligase 1-like
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hmg
Hydra vulgaris
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
Genetic Information Processing
Replication and repair
03030 DNA replication
100206246
03410 Base excision repair
100206246
03420 Nucleotide excision repair
100206246
03430 Mismatch repair
100206246
Enzymes [BR:
hmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100206246
6.5.1.6 DNA ligase (ATP or NAD+)
100206246
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100206246
DNA replication proteins [BR:
hmg03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
100206246
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
100206246
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100206246
NER (nucleotide excision repair)
Other NER factors
100206246
MMR (mismatch exicision repair)
Other MMR factors
100206246
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Other DBs
NCBI-GeneID:
100206246
NCBI-ProteinID:
XP_012559654
LinkDB
Position
Un
AA seq
885 aa
MPQKTIGSFFTKKAEQKKENGTSERLYLENEKSSDVKCKEDEHKDQTIDNPVVSLEKENE
HSKSFLDASKTIINEEIPIKRKTARKTVVGPKKPNEQLRNDLQPIESTNKSFENSVKCDS
PSKDPFDGNENHKIFNENVDNHTTASTKRKNNEESPEKSIDVKSSSFFAKKPRLEKKNKK
LPVSLEETKEEILEPKLDVVDQPSPSHKKPDSVKNGKKDCLKPDCVKPDKFNPASSTYHP
MKNACWCKNENVPYEALTRTFQEIEEISARLKIQSVLCNFFRSVIVLTPNDLLPCVYLCL
NKLAPAYEGMELGIGENVLMKAVCSSTGKNMTQIKAEVAEKGDLGIVAESCRSNQRMMFA
PPSLTVSGVFKKLKNIAEMTGHSSMAKKIEIIQQMFVACKNSEARYLIRSLGGKLRIGLA
EQSVLSALGQAVVLTPPGQDYPPQIIDASTILSSEKLKAECDEASLAIKTAYCELPSYDI
IIPQLLLNGWRKLPLTCHITPGIPLKPMLAHPTKGVSEVLKRFDDAKFVCEYKYDGERAQ
IHLLDNGEVKIYSRNQENNTSKYPDIVARIPKVIKTHVRSCIIDTESVAWDQENKRILPF
QVLTTRKRKDVEENDIKVQVCVHAFDLLYLNGESLVGKPFSKRRELLMSAFNQVEGEFVF
ATAKILSDTDEISEFLDESIQGNCEGLMLKTLDVDATYEIAKRSHNWLKLKKDYLEGVGD
TLDLVVIGGYHGTGKRTGKYGGYLLACYDEDNEEYQTICKAGTGFTDEQLAKHYEFFKNH
VIEKPRSYYRFDDGMKPDHWFEPVQVWEIRAADLSISPIYRAAIGIVDPDKGISLRFPRF
LRVRDDKKPEEATLSQQVAEFYNNQDQIKNASDFKSKSKIEEDFY
NT seq
2658 nt
+upstream
nt +downstream
nt
atgccacagaagacgattggttctttttttacaaaaaaagctgagcaaaagaaggagaat
ggaacatctgaaagactttatcttgaaaatgaaaaaagcagtgatgttaaatgtaaagaa
gatgaacataaagatcagacaatagataatcctgtggtttctttggaaaaagaaaatgaa
cattcaaaaagttttttggatgcttcaaaaacaattattaatgaagaaattccaataaag
cgaaaaacagcaagaaaaacagtagttggtccaaagaaaccaaatgaacaactaaggaat
gatttacaacccatagaatctactaataagtcatttgaaaattcagtaaaatgtgattca
ccaagtaaagacccttttgatggaaatgaaaaccataagattttcaatgaaaatgtagat
aatcatacaaccgcatcaacaaagcgcaaaaacaatgaagaatctcctgaaaaatcaatt
gatgtaaagtcttcaagtttttttgccaaaaaacctcgtcttgagaaaaaaaataaaaaa
cttccagtgtctttagaagaaacaaaagaagagatattagaaccaaaattagatgtggtg
gatcagccttcaccatctcataagaaacctgattctgtaaaaaatggcaaaaaagattgt
ctaaagcctgattgtgtaaaacctgacaaatttaatcctgcatcttctacttaccatcct
atgaaaaatgcttgctggtgcaaaaatgagaatgttccttatgaagctttaacaagaact
tttcaagaaatagaggaaatatcagcaagattaaaaattcaatcggtgctgtgcaatttt
tttcgctctgttattgtcttgacaccaaatgatttgttgccttgtgtttatttgtgttta
aataaattagctccagcatatgaaggtatggaactaggaattggtgaaaatgttttgatg
aaagctgtttgctcttcaacaggcaaaaacatgactcaaataaaagctgaagttgcagaa
aaaggagaccttggaatagttgcagagagttgtcgctctaatcagcgtatgatgttcgct
cccccttcattaacagttagtggtgtcttcaaaaaattgaaaaatatagctgaaatgaca
ggtcattcgtctatggcaaaaaaaattgaaataattcaacagatgtttgtagcatgcaaa
aattcagaagcaagatatttaattaggtcattaggtggtaaactaagaattggtcttgca
gaacagtctgtgttatctgctttaggacaagccgttgtattaactcctccaggtcaagat
tatcctccacaaattattgatgcaagtacaattttgtcttcagaaaaactgaaggctgaa
tgtgatgaggcttcattggccatcaaaacagcttattgtgaactaccatcatatgatata
attatacctcaactgttgttaaatggttggagaaaattgccactaacatgccatataaca
ccaggaataccattaaaacctatgttggcacatcctacaaaaggagtgagtgaagttcta
aaacgatttgatgatgcaaagtttgtttgtgagtataaatatgatggagagcgagcccaa
attcatttgcttgacaatggtgaagttaagatatatagcagaaaccaagaaaataataca
tctaaatatccagatattgttgcacgaatacctaaggtaataaaaacacatgtacggtct
tgtattattgacactgagtctgtggcctgggatcaagagaataaaagaattctacctttt
caagtgttgacaacaagaaagcgaaaggatgtagaagaaaatgacattaaagttcaagtt
tgtgtacatgcgtttgacttgttgtacctaaatggcgagtctttagtgggtaaaccattt
agtaaaagaagggaattgctgatgtctgcatttaatcaagttgaaggggaatttgttttt
gctactgcaaagattctaagtgacacagatgaaatttcagaatttcttgatgaatctata
caaggtaattgtgaaggactgatgttgaaaactttagatgttgacgctacttatgaaatt
gcaaagcgatcccataattggttaaagcttaagaaagattatttagagggggttggagac
acgcttgatttagttgttattggtggatatcatgggactggtaaaagaacaggaaagtat
gggggatacctgctggcatgttatgatgaagataacgaggaataccaaacaatatgcaag
gctggtactggcttcacggacgagcaattagctaagcactatgagttcttcaaaaatcat
gtcattgaaaaaccgcgctcgtattaccgatttgatgacggcatgaaaccagaccattgg
tttgaaccagtacaagtttgggaaatacgtgccgctgatttatctatctctccaatttac
agagcagctattggaatcgttgatcctgataaaggaatttcgcttcgttttccgcgtttt
ttacgtgtgcgagatgacaaaaagcctgaagaagctacattgtcacaacaagtagctgaa
ttttataataatcaagaccagattaaaaatgccagcgattttaaatctaaatccaagatc
gaagaagatttctactga
DBGET
integrated database retrieval system
