KEGG   Hydra vulgaris: 100206246Help
Entry
100206246         CDS       T01080                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hmg  Hydra vulgaris
Pathway
hmg03030  DNA replication
hmg03410  Base excision repair
hmg03420  Nucleotide excision repair
hmg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hmg00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    100206246
   03410 Base excision repair
    100206246
   03420 Nucleotide excision repair
    100206246
   03430 Mismatch repair
    100206246
Enzymes [BR:hmg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100206246
    6.5.1.6  DNA ligase (ATP or NAD+)
     100206246
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100206246
DNA replication proteins [BR:hmg03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100206246
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100206246
DNA repair and recombination proteins [BR:hmg03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100206246
   NER (nucleotide excision repair)
    Other NER factors
     100206246
   MMR (mismatch exicision repair)
    Other MMR factors
     100206246
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 100206246
NCBI-ProteinID: XP_012559654
LinkDB All DBs
Position
Un
AA seq 885 aa AA seqDB search
MPQKTIGSFFTKKAEQKKENGTSERLYLENEKSSDVKCKEDEHKDQTIDNPVVSLEKENE
HSKSFLDASKTIINEEIPIKRKTARKTVVGPKKPNEQLRNDLQPIESTNKSFENSVKCDS
PSKDPFDGNENHKIFNENVDNHTTASTKRKNNEESPEKSIDVKSSSFFAKKPRLEKKNKK
LPVSLEETKEEILEPKLDVVDQPSPSHKKPDSVKNGKKDCLKPDCVKPDKFNPASSTYHP
MKNACWCKNENVPYEALTRTFQEIEEISARLKIQSVLCNFFRSVIVLTPNDLLPCVYLCL
NKLAPAYEGMELGIGENVLMKAVCSSTGKNMTQIKAEVAEKGDLGIVAESCRSNQRMMFA
PPSLTVSGVFKKLKNIAEMTGHSSMAKKIEIIQQMFVACKNSEARYLIRSLGGKLRIGLA
EQSVLSALGQAVVLTPPGQDYPPQIIDASTILSSEKLKAECDEASLAIKTAYCELPSYDI
IIPQLLLNGWRKLPLTCHITPGIPLKPMLAHPTKGVSEVLKRFDDAKFVCEYKYDGERAQ
IHLLDNGEVKIYSRNQENNTSKYPDIVARIPKVIKTHVRSCIIDTESVAWDQENKRILPF
QVLTTRKRKDVEENDIKVQVCVHAFDLLYLNGESLVGKPFSKRRELLMSAFNQVEGEFVF
ATAKILSDTDEISEFLDESIQGNCEGLMLKTLDVDATYEIAKRSHNWLKLKKDYLEGVGD
TLDLVVIGGYHGTGKRTGKYGGYLLACYDEDNEEYQTICKAGTGFTDEQLAKHYEFFKNH
VIEKPRSYYRFDDGMKPDHWFEPVQVWEIRAADLSISPIYRAAIGIVDPDKGISLRFPRF
LRVRDDKKPEEATLSQQVAEFYNNQDQIKNASDFKSKSKIEEDFY
NT seq 2658 nt NT seq  +upstreamnt  +downstreamnt
atgccacagaagacgattggttctttttttacaaaaaaagctgagcaaaagaaggagaat
ggaacatctgaaagactttatcttgaaaatgaaaaaagcagtgatgttaaatgtaaagaa
gatgaacataaagatcagacaatagataatcctgtggtttctttggaaaaagaaaatgaa
cattcaaaaagttttttggatgcttcaaaaacaattattaatgaagaaattccaataaag
cgaaaaacagcaagaaaaacagtagttggtccaaagaaaccaaatgaacaactaaggaat
gatttacaacccatagaatctactaataagtcatttgaaaattcagtaaaatgtgattca
ccaagtaaagacccttttgatggaaatgaaaaccataagattttcaatgaaaatgtagat
aatcatacaaccgcatcaacaaagcgcaaaaacaatgaagaatctcctgaaaaatcaatt
gatgtaaagtcttcaagtttttttgccaaaaaacctcgtcttgagaaaaaaaataaaaaa
cttccagtgtctttagaagaaacaaaagaagagatattagaaccaaaattagatgtggtg
gatcagccttcaccatctcataagaaacctgattctgtaaaaaatggcaaaaaagattgt
ctaaagcctgattgtgtaaaacctgacaaatttaatcctgcatcttctacttaccatcct
atgaaaaatgcttgctggtgcaaaaatgagaatgttccttatgaagctttaacaagaact
tttcaagaaatagaggaaatatcagcaagattaaaaattcaatcggtgctgtgcaatttt
tttcgctctgttattgtcttgacaccaaatgatttgttgccttgtgtttatttgtgttta
aataaattagctccagcatatgaaggtatggaactaggaattggtgaaaatgttttgatg
aaagctgtttgctcttcaacaggcaaaaacatgactcaaataaaagctgaagttgcagaa
aaaggagaccttggaatagttgcagagagttgtcgctctaatcagcgtatgatgttcgct
cccccttcattaacagttagtggtgtcttcaaaaaattgaaaaatatagctgaaatgaca
ggtcattcgtctatggcaaaaaaaattgaaataattcaacagatgtttgtagcatgcaaa
aattcagaagcaagatatttaattaggtcattaggtggtaaactaagaattggtcttgca
gaacagtctgtgttatctgctttaggacaagccgttgtattaactcctccaggtcaagat
tatcctccacaaattattgatgcaagtacaattttgtcttcagaaaaactgaaggctgaa
tgtgatgaggcttcattggccatcaaaacagcttattgtgaactaccatcatatgatata
attatacctcaactgttgttaaatggttggagaaaattgccactaacatgccatataaca
ccaggaataccattaaaacctatgttggcacatcctacaaaaggagtgagtgaagttcta
aaacgatttgatgatgcaaagtttgtttgtgagtataaatatgatggagagcgagcccaa
attcatttgcttgacaatggtgaagttaagatatatagcagaaaccaagaaaataataca
tctaaatatccagatattgttgcacgaatacctaaggtaataaaaacacatgtacggtct
tgtattattgacactgagtctgtggcctgggatcaagagaataaaagaattctacctttt
caagtgttgacaacaagaaagcgaaaggatgtagaagaaaatgacattaaagttcaagtt
tgtgtacatgcgtttgacttgttgtacctaaatggcgagtctttagtgggtaaaccattt
agtaaaagaagggaattgctgatgtctgcatttaatcaagttgaaggggaatttgttttt
gctactgcaaagattctaagtgacacagatgaaatttcagaatttcttgatgaatctata
caaggtaattgtgaaggactgatgttgaaaactttagatgttgacgctacttatgaaatt
gcaaagcgatcccataattggttaaagcttaagaaagattatttagagggggttggagac
acgcttgatttagttgttattggtggatatcatgggactggtaaaagaacaggaaagtat
gggggatacctgctggcatgttatgatgaagataacgaggaataccaaacaatatgcaag
gctggtactggcttcacggacgagcaattagctaagcactatgagttcttcaaaaatcat
gtcattgaaaaaccgcgctcgtattaccgatttgatgacggcatgaaaccagaccattgg
tttgaaccagtacaagtttgggaaatacgtgccgctgatttatctatctctccaatttac
agagcagctattggaatcgttgatcctgataaaggaatttcgcttcgttttccgcgtttt
ttacgtgtgcgagatgacaaaaagcctgaagaagctacattgtcacaacaagtagctgaa
ttttataataatcaagaccagattaaaaatgccagcgattttaaatctaaatccaagatc
gaagaagatttctactga

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