Hydra vulgaris (swiftwater hydra): 100211005
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Entry
100211005 CDS
T01080
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03022
Basal transcription factors
hmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100211005
09124 Replication and repair
03420 Nucleotide excision repair
100211005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100211005
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100211005
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100211005
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100211005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-UDP
zf-ACC
zf-RING_2
zf-RING_4
zf-C3HC4
CENP-C_mid
TRAF3_RING
DUF501
Sod_Fe_C
Prok-RING_4
zf-P11
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
100211005
NCBI-ProteinID:
XP_047133704
LinkDB
All DBs
Position
5:complement(58868412..58900453)
Genome browser
AA seq
299 aa
AA seq
DB search
MDEQTCPRCKTTTYRNKSLKLLVNVCGHKLCQTCVDVLFTRPSAACPQCNTALRRSDFRN
QLFEDDAVEKEVDVRKKILKIYNKREDDFNSLDEFNNYLEDIEIIIFNIVNKISVEETKK
KIELYKKENERLIKKNQSKLNQEEAMYLAYLQNEKEDYANKRKKIIQDELDSEKRKCKEK
ENLINDLIYANAPAEEVIARHVNVKRRKEEEESKKSFFFSEKKKNLKLVSQPIIEAPLFE
YKAPIIEWFGPTPPDETDIIKNGYLKHIRSAQPAERAGGYTESIACRRALQEAFDSLFI
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaaacctgtccaagatgtaaaacaactacttacaggaacaagtctttgaag
ttgttggttaatgtatgtggacataagttatgccagacttgcgtagatgtcttgtttaca
cgtccctcagcagcttgccctcaatgtaatactgcattaagaagaagtgattttcgaaac
caattatttgaagatgatgctgttgaaaaagaagttgatgttcgcaaaaagattttaaaa
atctacaataaacgagaagatgattttaattctctggatgaattcaataattatcttgaa
gatattgaaataataatctttaatattgttaacaaaatcagtgtagaagaaacaaagaaa
aaaatcgaattgtacaaaaaagaaaatgaaagattaataaagaagaaccaatcaaaactt
aaccaggaagaggcaatgtatttggcttatcttcaaaatgaaaaagaggattatgcaaat
aaaagaaaaaaaattattcaagacgaattagactcagagaaaagaaaatgtaaagaaaaa
gaaaatttgattaatgacttaatttacgctaatgcacctgctgaagaggttattgcacgg
catgtcaacgtcaaacgtcgtaaagaggaggaagaatctaaaaaatcattttttttctcc
gaaaagaagaaaaatttaaaactagtgagtcaacctataatagaagctccattatttgaa
tacaaggcaccaattattgaatggtttggacctactcctccagatgaaactgatattatc
aaaaatgggtatttgaaacatattcggtctgcgcaacctgctgaaagagctggtggctac
accgaatcgattgcttgcagacgagcattgcaagaagcatttgattctctttttatatga
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