Hydra vulgaris (swiftwater hydra): 100211920
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Entry
100211920 CDS
T01080
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03022
Basal transcription factors
hmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100211920
09124 Replication and repair
03420 Nucleotide excision repair
100211920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100211920
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100211920
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100211920
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100211920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
SLED
Motif
Other DBs
NCBI-GeneID:
100211920
NCBI-ProteinID:
XP_002159945
UniProt:
T2M882
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All DBs
Position
6:22800129..22802702
Genome browser
AA seq
458 aa
AA seq
DB search
MTDVSKKKKLDCKDLYGYLLTLSPSSLNALYNDPFTCLAVFRGLPELAKHYIMRTLFTNQ
SLSDAFVLSWCKKEWAKDHIEAVNKLKGLHIWVSFEIGTPMLRYEFNITFQTNLRIGLCG
GGPVQATPLKAVEEKHARDVAFLDNYSKERWECILYYMTGSQVTGNAGVSQDVARVLINA
GLLIFDHQEQATCITSSGFQFLLLDTSSQVWYFMVQHLNSMEPEILVQCLSFLFQTSFSV
LGKDYPVNDLTEAQFSFLQLLREIGLAFQRKRKSKRFYPTRLAINLGSAVTGNSDSSSQQ
QGFLVVETNYRVYAYTDSVLHIALLSLFTDIKARFPSFTVALLSRESVQQALACGISAEQ
IIDFLKTRAHSQMTTSSPIIASTITDQIKLWEMERDRLRYSQGVLYNQFLSQSDFEMLRK
FADEKNHLLWANNQKRLMVVSKSGHEDVKKYWKRNKPS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgtaagtaaaaagaaaaagttagattgtaaagacttatatggctacttgctg
acactctcaccaagttcactcaatgctctgtataatgatccgttcacatgtcttgcagtt
tttagaggtcttccagaattagcgaaacattatattatgcggactttatttacaaaccaa
tctttatcagatgcatttgttttatcatggtgtaaaaaagaatgggctaaagatcatata
gaagcagtaaacaaactgaagggattacatatatgggttagttttgaaataggaactcca
atgttacggtatgaatttaatattacttttcaaacaaatttaagaataggactttgtgga
ggaggtcctgttcaagcaacacctttaaaagcagttgaagaaaaacatgctcgggatgtt
gcatttctagataattattcaaaagaaagatgggaatgtattttatattatatgactgga
tctcaagttacaggaaatgcaggcgttagtcaagatgttgcacgtgttcttataaatgct
gggttactcattttcgatcaccaggaacaagcaacttgcataacttcatcaggatttcaa
tttttacttttagacacctcttcacaagtatggtactttatggttcaacatttaaactct
atggaaccagaaattcttgttcaatgtttatctttcttatttcagacaagcttttcagtt
cttggcaaagattatccagttaatgacttaacagaagctcaattttcatttttacaacta
ttacgtgaaattggcttagctttccagcgtaaaagaaaatctaaacgcttttatccaaca
agattggccattaatctgggctcagctgttaccggtaatagtgattctagttcacaacag
caaggttttttagttgttgaaactaactatagggtatatgcatatactgactcagttctt
cacattgctttgcttagcttgtttacagatattaaagcacgctttccaagttttactgta
gctttactaagccgtgagagtgtacagcaagcattagcatgtggaatatctgctgaacaa
ataattgattttttaaaaactcgagcacactcacaaatgacaactagctcaccgattata
gcttcaacaatcactgatcagataaaactgtgggaaatggaaagagacaggttgcgttat
tctcaaggtgttttgtacaatcagtttctttcacaaagtgattttgaaatgctgcgaaag
tttgcagatgaaaaaaatcatttattgtgggcaaataatcaaaaacgtttaatggttgta
tctaagtctggtcatgaagatgtaaaaaaatactggaagcgtaataaacctagctag
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