KEGG   Hoeflea sp. IMCC20628: IMCC20628_03619Help
Entry
IMCC20628_03619   CDS       T03926                                 

Definition
(GenBank) DNA ligase, ATP-dependent, PP_1105 family
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hoe  Hoeflea sp. IMCC20628
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:hoe00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    IMCC20628_03619
   03410 Base excision repair
    IMCC20628_03619
   03420 Nucleotide excision repair
    IMCC20628_03619
   03430 Mismatch repair
    IMCC20628_03619
Enzymes [BR:hoe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IMCC20628_03619
    6.5.1.6  DNA ligase (ATP or NAD+)
     IMCC20628_03619
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     IMCC20628_03619
DNA replication proteins [BR:hoe03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    IMCC20628_03619
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     IMCC20628_03619
DNA repair and recombination proteins [BR:hoe03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     IMCC20628_03619
   NER (nucleotide excision repair)
    Other NER factors
     IMCC20628_03619
   MMR (mismatch exicision repair)
    Other MMR factors
     IMCC20628_03619
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(3792462..3794075)
Genome map
AA seq 537 aa AA seqDB search
MNRFADLLDMLAFTPSRNAKLTLLQDYFRIVPDPERGYALAAIARDLDIPAVKPAQLREL
ISARMDPELFGYSYDYVGDLAETIALAWPEKGEALAGRNDAPGLTEVVETLIASSRRDGP
GLVEDWLDRLDAPGRYALLKLVTGGFRMGLSGRLIKQALAAFGDVDVNQIEELWHGLTPP
YTDLFAWLEGTGEKPVNASAAPFRPVMLSHAIDVKDFERLDPADFVAEWKWDGIRVQATS
ERGISRLYTRTGDDISAAFPDLVDAISFDGALDGELLVARPSGSGIETGGFSDLQQRLNR
KTVSAKQLRDHPAFFRAYDLLQAGDEDLRAQPFLDRRQKLEAFVGELDPMRFDCSEMLPF
GSWDELAALRADPPFAVIEGVMIKRRAAPYLPGRPKGEWFKWKRDPFLIDAVLMYAQRGH
GKRSGFYSDYTFGVWREPGELVPVGKAYFGFTDDELVEIDKYVRNNTIERFGPVRSVRAG
LDKGLVFEVAFEGINRSSRHKSGVAMRFPRINRLRWDKPPGEADRLDTLERMIDGAA
NT seq 1614 nt NT seq  +upstreamnt  +downstreamnt
gtgaaccgtttcgctgaccttctcgacatgctggcgttcacaccctcgcgcaatgccaag
ctaacgctgttgcaggattacttccgtattgtacccgatcctgagcgcggttacgcgctg
gcggcaatcgcccgcgatcttgacatacctgcggtcaagccggcgcaattgcgcgaactg
atttccgcccgcatggatcccgaactgttcggctattcctatgattatgtcggcgatctg
gccgaaaccatcgcgctcgcctggccagagaagggcgaggcacttgccggccgcaatgat
gcgccgggattgaccgaagtggtcgaaacactgatcgcatcctcacgccgggatggtccc
ggtcttgtcgaggactggcttgaccggctcgatgcgccgggccggtacgcattgctcaag
ctggtcaccggcggatttcgaatggggctctcgggccggctgatcaagcaggcgctagcc
gcttttggcgatgtcgatgtcaatcagatcgaggaactctggcacggactgacaccgcct
tataccgatctgtttgcctggctcgaggggaccggcgagaagccggtgaatgcgagcgca
gccccgttccgcccggtgatgctgtcacacgccatcgacgtgaaagactttgaaaggctc
gacccggcggatttcgttgccgaatggaaatgggacggcatccgcgtgcaggcgacatcc
gagcgcggcatcagccggctctacacccgcaccggcgacgacatttccgcagccttcccg
gacctggttgacgcgatttcctttgacggtgcgctggacggtgaattgctggtggcccgg
ccatcaggcagcggcatcgaaaccggcggtttttccgatcttcagcaacgcctcaaccgc
aagaccgtcagcgccaaacaattgcgcgatcatccggccttcttccgtgcctatgatttg
cttcaggccggcgacgaagacctgcgcgcccaaccctttcttgaccgacggcagaagctt
gaggcctttgtcggagagcttgacccgatgcggttcgattgttctgaaatgcttccattc
ggaagctgggatgaacttgctgcgctacgtgctgatccgccatttgcggtgatcgagggc
gtgatgatcaagcgcagggcggcaccctatcttccgggccgtcccaagggcgagtggttc
aagtggaaacgcgatcccttcctgatcgacgcggtgctgatgtatgcgcagcgtggtcat
ggcaaacggtcgggtttttactccgactacactttcggggtctggcgcgagccgggggaa
ctggtcccggtcggcaaggcctatttcggcttcaccgatgacgagcttgtcgagatcgac
aaatatgtccgcaacaacaccatcgagcgcttcggcccggtgcggtcggtgcgtgccggt
ctcgacaaggggctggtattcgaagttgcttttgaaggcatcaatcgctcaagccgtcac
aaatccggtgtcgccatgcgatttccgcgcatcaaccggctgcgctgggacaagccgccg
ggcgaagcggaccggttggacacgcttgagcggatgattgacggtgctgcatga

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