Halothermothrix orenii: Hore_21200
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Entry
Hore_21200 CDS
T00838
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hor
Halothermothrix orenii
Pathway
hor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hore_21200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hor03400
]
Hore_21200
Enzymes [BR:
hor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hore_21200
DNA repair and recombination proteins [BR:
hor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hore_21200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
RecG_dom3_C
AAA_22
DUF5088
Motif
Other DBs
NCBI-ProteinID:
ACL70865
UniProt:
B8D013
LinkDB
All DBs
Position
complement(2307650..2311162)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKLSDLLLSSEKTEKIMKGINQGQNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH
LNRYYEDLIRMMPEEKVLLYPESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAVLLTT
ATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGII
DIFPLSVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIP
AIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPELHTLI
DYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREALLDKLK
DFNFVYSSTSINEELSWVKDFEKVSFTTRSVEPYHGKLDLFAERVRELVDTGYRVFVTLN
SSNKARRVVNYLKENEMAVAFRREEFSRERIIVMPGSLSEGFIIDDINLALFTEKEVLGN
PQKKRRQLNDIENGVKISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYA
GEDKLYVPTDQFNLVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAE
RETIKGYSFSDDTVWQKEFEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGK
TEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQRE
VLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTM
TATPIPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYF
VHNRVEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETG
LDIPNVNTIIVNRADQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIK
EFTNLGSGFKIAMRDLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKG
ITRVEIELDIDAYLPDEYITDSRQKIDIYKKIMALKDFEEVEDMIDELIDRFGDPPEPVL
NLLGISKLKVKASKLGIDKISRNKKFVEFRFMKPDYLDGDKVVKFVKNHSRKVKIKSGKR
PVIAYRLSPGRTTIKRLEKILSELKASITI
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaaattatcagatctgctattatcaagcgagaagacggaaaaaataatgaagggtatt
aatcaggggcagaacctgtttattgaaggaatgccggggaaccggtttgcttttattact
ggaaatatattacagaaaatagacaaaacggtactcatggtaacatatgatacggtacac
ctcaaccgttattatgaagacctgatccggatgatgccggaggaaaaggtcttactctat
cctgaatcagaggttttaccccatgagcagattgtacctgatctggctgaaacggcccag
aggattagagtattacagagtgttattacagataagaaacccgcggttttattaacaact
gctacagccctgttgagaaaaatgattcctgtcagtactttcaaaaaatatattttttca
ttacaggtaggtcaggaaatagatttaaataaatttacggaaaagcttagaatatcaggg
tataaccgggtagagatggttgaaaacccgggagaattcagtatcaggggtggaattata
gatatttttcctttatcggttaacaaacccttccggatagaattattcggggatgagata
gatactataagggaatttgaacctgctacccagagatcccggaggagtctagaaaaggtc
tttatatctccagcccgggaaataattgtttccccccggcagattaaaaaagccattccg
gctattaaatctgattttaatgataccataaataccctgtatgaaaacaactataaagaa
gagggagattatctaagggaaaaaagggatgaaagcctggagaagctggctgaaagagat
gattttccaggctctgaacagtttttaccctattattatcccgaacttcacactttaata
gattacctgcctgatgattctgtaatcttttttgatcaggctgaaaaaacctggcagagg
ataaagggatttatagatgaacttcaggaaacccaggctaccttactggagcaggggagt
gttcttcctacttaccataaaaactttctgtcacgggaagctttacttgataagcttaag
gactttaattttgtttatagcagcacttcaattaatgaagaattgtcctgggttaaggat
tttgaaaaggtctcttttacgacccggagtgttgagccctatcacggtaagctggattta
tttgcagagcgggtccgggaattggttgacacaggataccgggtatttgttactttaaat
tcaagtaataaggccaggcgggtggttaattaccttaaagagaacgaaatggctgttgct
ttcaggagagaggaattttcccgggaacggataattgttatgccggggagtctgtctgag
ggttttattattgatgatataaacctggccctttttacggaaaaggaagtcctgggtaat
ccccagaaaaaaaggcggcagcttaatgatattgaaaacggggtaaagatttcctctata
gacgaattacaggttggagactatgttgttcatgaaaaccatggaatagggaaatatctc
ggggtaaagacgctggcggtacagggtcagcacaaggactatctggttttaaaatatgcc
ggggaagataaattatatgtgccgactgatcagtttaatctggttcagaagtatatcggg
gccgataataaaccccctaaattatataaactcgggggaaatgactggaaaaaggttaaa
cagaaggttaaggaatcggttaaagaaatggccattggcttattagaactttatgccgag
cgggaaacaataaaaggctattctttttctgatgatacagtctggcagaaggaatttgaa
gaggcctttccctatgaagaaacccctgatcagttaaaagccattgaagaggtaaaaaat
gatatggaatcggcgacccccatggaccggttattatgtggggatgttggttacgggaag
accgaagtggcgatcagggctgcttttaaggcggtaatggacggaaagcagactgctgtt
ttagtcccgacaactattctggcccagcagcattataataccttcagtgagagaatgaaa
aactaccccattaatattgaaatgatcagtcgctttaaaaccccggctgagcagagggag
gtcctcaaaaaactggccgccggggaagtagatattattatcgggactcaccgtctcctt
tccagagatgtagtttttaatgacctgggattgttaattattgatgaggaacagcgtttc
ggggtatctcataaagaaaagataaaggacttaaaaaggaatgtcgatgtcctgaccatg
acggcaaccccgatcccccgtaccctccatatggctctggttggagtcagggatatgagt
gttattgagaccccacccgagaaccgctatcccattagaacctatatcagagagtttaat
aaagaattgatccgggatgcggtcagaaaggaattggggcgggaaggtcaggtatatttt
gtgcataacagggtcgaagatatccaggaacaggcgaccatgattaaaaagctggtccct
gagtgccgggtggcagttgcccatggtcagatgaatgaacataaactggagcggttgatg
cttgatttttataaccaccagtacgatgtcctggtatgtacaacaataatagaaactgga
ctggatatccccaatgttaatactattattgtcaacagggccgatcagatgggattggcc
cagctatatcagcttcgggggcgggttggccgttccaaccggattgcatatgcctatttg
ctatatgaaaaagacagggttttgcctgaagtagctgaaaagaggctgcgggctattaaa
gaatttacaaacctgggttcagggtttaaaattgccatgcgcgatctggaaataagggga
gctggaaatttactggggcccgagcagcatggtcatattgcttcagtagggttttcactt
tactgtaagcttcttgaaggtgctgttgaagaacttaagggcaaagaaaaagataaagga
attacccgggttgagattgaactggatattgatgcctatcttccagatgaatatataaca
gattcccgccagaagatagatatctataaaaagattatggccttaaaggattttgaagag
gtagaggatatgattgatgaacttattgataggttcggggacccacctgagcctgtgcta
aatttgctgggaataagtaaactgaaggtgaaggcaagtaagctgggaatagataaaata
tcccgtaataaaaagtttgtggagtttcgttttatgaagcccgattacctcgatggagat
aaagtagttaaatttgtaaaaaatcattcccggaaggtaaaaattaaatccggtaaaagg
cctgttattgcttaccgtttgtcccccgggagaacaaccataaaaaggcttgagaagatc
ctgtctgagttaaaggcttcaattaccatttaa
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integrated database retrieval system