KEGG   Halothermothrix orenii: Hore_21200
Entry
Hore_21200        CDS       T00838                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hor  Halothermothrix orenii
Pathway
hor03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hore_21200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hor03400]
    Hore_21200
Enzymes [BR:hor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hore_21200
DNA repair and recombination proteins [BR:hor03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Hore_21200
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD CarD_TRCF_RID Helicase_C ResIII UB2H MFD_D3 RecG_dom3_C AAA_22 DUF5088
Other DBs
NCBI-ProteinID: ACL70865
UniProt: B8D013
LinkDB
Position
complement(2307650..2311162)
AA seq 1170 aa
MKLSDLLLSSEKTEKIMKGINQGQNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH
LNRYYEDLIRMMPEEKVLLYPESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAVLLTT
ATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGII
DIFPLSVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIP
AIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPELHTLI
DYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREALLDKLK
DFNFVYSSTSINEELSWVKDFEKVSFTTRSVEPYHGKLDLFAERVRELVDTGYRVFVTLN
SSNKARRVVNYLKENEMAVAFRREEFSRERIIVMPGSLSEGFIIDDINLALFTEKEVLGN
PQKKRRQLNDIENGVKISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYA
GEDKLYVPTDQFNLVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAE
RETIKGYSFSDDTVWQKEFEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGK
TEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQRE
VLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTM
TATPIPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYF
VHNRVEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETG
LDIPNVNTIIVNRADQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIK
EFTNLGSGFKIAMRDLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKG
ITRVEIELDIDAYLPDEYITDSRQKIDIYKKIMALKDFEEVEDMIDELIDRFGDPPEPVL
NLLGISKLKVKASKLGIDKISRNKKFVEFRFMKPDYLDGDKVVKFVKNHSRKVKIKSGKR
PVIAYRLSPGRTTIKRLEKILSELKASITI
NT seq 3513 nt   +upstreamnt  +downstreamnt
atgaaattatcagatctgctattatcaagcgagaagacggaaaaaataatgaagggtatt
aatcaggggcagaacctgtttattgaaggaatgccggggaaccggtttgcttttattact
ggaaatatattacagaaaatagacaaaacggtactcatggtaacatatgatacggtacac
ctcaaccgttattatgaagacctgatccggatgatgccggaggaaaaggtcttactctat
cctgaatcagaggttttaccccatgagcagattgtacctgatctggctgaaacggcccag
aggattagagtattacagagtgttattacagataagaaacccgcggttttattaacaact
gctacagccctgttgagaaaaatgattcctgtcagtactttcaaaaaatatattttttca
ttacaggtaggtcaggaaatagatttaaataaatttacggaaaagcttagaatatcaggg
tataaccgggtagagatggttgaaaacccgggagaattcagtatcaggggtggaattata
gatatttttcctttatcggttaacaaacccttccggatagaattattcggggatgagata
gatactataagggaatttgaacctgctacccagagatcccggaggagtctagaaaaggtc
tttatatctccagcccgggaaataattgtttccccccggcagattaaaaaagccattccg
gctattaaatctgattttaatgataccataaataccctgtatgaaaacaactataaagaa
gagggagattatctaagggaaaaaagggatgaaagcctggagaagctggctgaaagagat
gattttccaggctctgaacagtttttaccctattattatcccgaacttcacactttaata
gattacctgcctgatgattctgtaatcttttttgatcaggctgaaaaaacctggcagagg
ataaagggatttatagatgaacttcaggaaacccaggctaccttactggagcaggggagt
gttcttcctacttaccataaaaactttctgtcacgggaagctttacttgataagcttaag
gactttaattttgtttatagcagcacttcaattaatgaagaattgtcctgggttaaggat
tttgaaaaggtctcttttacgacccggagtgttgagccctatcacggtaagctggattta
tttgcagagcgggtccgggaattggttgacacaggataccgggtatttgttactttaaat
tcaagtaataaggccaggcgggtggttaattaccttaaagagaacgaaatggctgttgct
ttcaggagagaggaattttcccgggaacggataattgttatgccggggagtctgtctgag
ggttttattattgatgatataaacctggccctttttacggaaaaggaagtcctgggtaat
ccccagaaaaaaaggcggcagcttaatgatattgaaaacggggtaaagatttcctctata
gacgaattacaggttggagactatgttgttcatgaaaaccatggaatagggaaatatctc
ggggtaaagacgctggcggtacagggtcagcacaaggactatctggttttaaaatatgcc
ggggaagataaattatatgtgccgactgatcagtttaatctggttcagaagtatatcggg
gccgataataaaccccctaaattatataaactcgggggaaatgactggaaaaaggttaaa
cagaaggttaaggaatcggttaaagaaatggccattggcttattagaactttatgccgag
cgggaaacaataaaaggctattctttttctgatgatacagtctggcagaaggaatttgaa
gaggcctttccctatgaagaaacccctgatcagttaaaagccattgaagaggtaaaaaat
gatatggaatcggcgacccccatggaccggttattatgtggggatgttggttacgggaag
accgaagtggcgatcagggctgcttttaaggcggtaatggacggaaagcagactgctgtt
ttagtcccgacaactattctggcccagcagcattataataccttcagtgagagaatgaaa
aactaccccattaatattgaaatgatcagtcgctttaaaaccccggctgagcagagggag
gtcctcaaaaaactggccgccggggaagtagatattattatcgggactcaccgtctcctt
tccagagatgtagtttttaatgacctgggattgttaattattgatgaggaacagcgtttc
ggggtatctcataaagaaaagataaaggacttaaaaaggaatgtcgatgtcctgaccatg
acggcaaccccgatcccccgtaccctccatatggctctggttggagtcagggatatgagt
gttattgagaccccacccgagaaccgctatcccattagaacctatatcagagagtttaat
aaagaattgatccgggatgcggtcagaaaggaattggggcgggaaggtcaggtatatttt
gtgcataacagggtcgaagatatccaggaacaggcgaccatgattaaaaagctggtccct
gagtgccgggtggcagttgcccatggtcagatgaatgaacataaactggagcggttgatg
cttgatttttataaccaccagtacgatgtcctggtatgtacaacaataatagaaactgga
ctggatatccccaatgttaatactattattgtcaacagggccgatcagatgggattggcc
cagctatatcagcttcgggggcgggttggccgttccaaccggattgcatatgcctatttg
ctatatgaaaaagacagggttttgcctgaagtagctgaaaagaggctgcgggctattaaa
gaatttacaaacctgggttcagggtttaaaattgccatgcgcgatctggaaataagggga
gctggaaatttactggggcccgagcagcatggtcatattgcttcagtagggttttcactt
tactgtaagcttcttgaaggtgctgttgaagaacttaagggcaaagaaaaagataaagga
attacccgggttgagattgaactggatattgatgcctatcttccagatgaatatataaca
gattcccgccagaagatagatatctataaaaagattatggccttaaaggattttgaagag
gtagaggatatgattgatgaacttattgataggttcggggacccacctgagcctgtgcta
aatttgctgggaataagtaaactgaaggtgaaggcaagtaagctgggaatagataaaata
tcccgtaataaaaagtttgtggagtttcgttttatgaagcccgattacctcgatggagat
aaagtagttaaatttgtaaaaaatcattcccggaaggtaaaaattaaatccggtaaaagg
cctgttattgcttaccgtttgtcccccgggagaacaaccataaaaaggcttgagaagatc
ctgtctgagttaaaggcttcaattaccatttaa

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