Glaesserella parasuis KL0318: JT17_07495
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Entry
JT17_07495 CDS
T03312
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpak
Glaesserella parasuis KL0318
Pathway
hpak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JT17_07495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpak03021
]
JT17_07495
03400 DNA repair and recombination proteins [BR:
hpak03400
]
JT17_07495
Enzymes [BR:
hpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JT17_07495
Transcription machinery [BR:
hpak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JT17_07495
DNA repair and recombination proteins [BR:
hpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JT17_07495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Baculo_helicase
Herpes_PAP
Motif
Other DBs
NCBI-ProteinID:
AIK90560
LinkDB
All DBs
Position
1498874..1503157
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQSKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVIEPGMTDLEKNQLLTEEQFLDAEERWGDEFEAK
MGAEGIQALLKDLDLEHQCEMLREELQETNSETKRKKITKHLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRITEYEKNASGEFEATTSLVDTTIGRAILWMISPKGMPFKLFNQTLGKK
AISKLINESYRRLGLKESVVFADQIMYTGFAYAARSGSSVGIDDMVIPAQKYEIISAAEE
EVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVLNREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGSEEVLIPRNTLIDEKWCDVIDRESVDVIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKSVTNKDGKLVLTSRNTELTVVDAFGRTKENYKVPYGAVLSKADGAEVNAGEVVAN
WDPHTMPIISEVSGFIKFSDIVDGLTVTRQTDELTGLSSVVVQDVGERATAGKDLRPALK
LVDAQGNDILIAGTDVAAQYFLPGKAIVTLNDGAEISVGEALARIPQESTATKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETHEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVARVKIANRKRVAEGKPEVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHKERAKRRSLDEEIS
VAQAAVSASSFATEEDIEAETQSFVNDEATQNLAALLNAGFDSDDEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatctaaatcgaacgacgatttcgatgtg
attaaaatcggtttagcatcaccagacaaaatccgttcttggtcgtttggtgaagtcaaa
aaaccagaaaccatcaactaccgtacattcaaacctgaacgtgacggtcttttctgtgcg
cgtattttcgggccggtaaaagattacgaatgtctttgtggtaaatacaaacgcttaaaa
caccgtggtgtgatttgtgaaaaatgtggcgttgaagtcacccaaaccaaagttcgccgt
gaccgtatgggacacattgaactggcttgcccggtggcacacatttggttcttaaaatca
cttccgtcccgtatcggcttaatccttgatatgccgttgcgtgatattgaacgtgtgctt
tattttgaaagctatgtcgtgatcgaaccgggtatgacggatttagagaaaaatcagtta
ttaaccgaagaacagttcttagacgcagaagagcgttggggcgacgagtttgaagcgaaa
atgggtgcagaaggtatccaagcgttactcaaagacttagatttagaacatcaatgtgaa
atgttgcgtgaagagttacaagaaaccaactcagaaaccaaacgcaaaaaaatcactaaa
cacttaaaattacttgaagcattcattcaatcaggcaacaaacctgaatggatggtaatg
acggtattaccggttcttccaccggatcttcgtccattagttccgcttgatggcggtcgt
tttgcgacatctgatctgaacgatttatatcgccgtgttattaaccgtaacaaccgttta
aaacgtcttttagacttaatcgcaccggatattatcgtgcgtaacgaaaaacgtatgtta
caagaatcggttgatgcgttattagataacggtcgtcgtggtcgtgcaattacgggttct
aacaaacgtccattaaaatcacttgcggacatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtagattactccggtcgttcagtaatcaccgtaggtcca
tacctacgcttacaccaatgtggtttaccgaaaaaaatggcgttggaattattccgtccg
tttatctactctaaattagaaagccgtggcattgcttcaacgatcaaagcggcgaagaaa
atggtagagcgtgaagatccgattgtatgggatattcttgctgaagttatccgtgaacac
ccgatcctgcttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccg
ttgttgattgaaggtaaagcgatccagttacacccacttgtgtgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggtacacgttccattaacgcttgaagcacagttagaa
gcacgtgcgttaatgatgtctaccaacaacgtactttcaccggcaaacggtgatccgatt
atcgtaccatctcaggacgttgtattaggtctttactatatgacccgtgagaaagtaaac
ggtaaaggcgaaggaatgtacttccttgaccctcgtgaagcagaaaaagcataccgtaca
ggtcaagcggaattacactctcgtgttaaagtgcgtattactgaatatgagaaaaacgca
agcggtgagtttgaagcaacaaccagcttagtcgataccactatcggtcgtgcaatccta
tggatgatttcaccaaaaggtatgccgtttaaactgttcaaccaaactttaggcaaaaaa
gcgatttcaaaattaatcaacgaaagctaccgccgtttaggtttgaaagaatcagttgta
ttcgctgaccaaattatgtacacaggttttgcatatgcggcacgttccggttcatctgtt
ggtattgatgatatggtgattccagcacagaaatacgaaattatttcagctgctgaagaa
gaagttgcagaaatccaagagcagttcaactcaggtcttgtaaccgcaggtgagcgttat
aacaaagtgatcgatatttgggcggctgcaaacgaacgtgttgcgaaagcgatgatggaa
aacttatcaacggaagaagtattaaaccgtgaaggtaatccggaaaaacaagcatcattt
aacagcatctttatgatggcagactctggtgcgcgtggttctgcagcacagattcgtcag
ttagcaggtatgcgtggcttgatggctcgtccagacggttcgatcatcgaaaccccaatt
accgcaaacttccgtgaaggcttgaacgttcttcaatactttatttcaacccacggtgcg
cgtaaaggtcttgcggataccgcattaaaaacagcaaactcaggttacttaacccgtcgt
ttagttgatgtggcacaagacttagtgatcgtagaagacgactgtggtacacacgaaggt
atcgtgatgaccccacttatcgaaggtggtgacgtaaaagaagcattgcgtgatcgtgta
ttaggtcgtgtggtagctgaagatgtcttaaaaccaggttcagaagaagtgttaatccca
cgtaacaccctaattgatgaaaaatggtgtgatgtgattgaccgtgaatctgttgatgtg
atcaaagtgcgctcagtcgtaacctgtaacacagacttcggcgtgtgtgcgaaatgttac
ggtcgtgaccttgctcgtggtcacttaatcaaccaaggtgaagcgatcggtgttattgcg
gcacaatcaatcggtgaaccgggtacacagttaacgatgcgtacattccatatcggtggt
gcggcatctgcagctgcaaaagaatctagcattcaagtgaaaaatgcaggaacgatcaaa
cttaccaatgcgaaatcggttacaaacaaagacggcaagttagtactaacttctcgtaac
accgaattaactgtggttgatgcgttcggtcgaactaaagagaactataaagtgccttac
ggtgcggtgctttcaaaagcagatggtgcagaagtgaatgcaggcgaagtggttgctaac
tgggatccacatacaatgccaatcatctctgaagtaagcggtttcatcaagttcagcgac
attgtcgatggcttaaccgtaacacgtcaaaccgatgaactcacaggtctttcatctgtg
gtagtacaagatgtgggtgagcgtgcaacggcaggtaaagatttacgtccagcattaaaa
ttagtcgatgcacaaggcaacgatattttaatcgcaggtaccgatgttgcagcacaatac
ttcttaccaggtaaagcaattgttaccttaaacgacggtgcagaaatctctgtgggtgag
gcattagcgcgtattccacaagaatccacagcgactaaggatattacgggtggtcttcca
cgcgttgcagacttatttgaagctcgtaaaccgaaagagccagcaatccttgcggaaatt
tcaggtatcgtttcatttggtaaagaaactaaaggaaaacgccgcttgttaattactcca
gcagagggcgaaacacacgaggaaatgattccgaaatggcgtcagctcaatgtgtttgaa
ggcgaaatggtacaacgtggtgatgtgatctctgacggtgcggaaacgccacacgacatc
ttacgcttacgtggtgttcacgcagtaactgaatacatcgtaaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgacaagcacatcgaagtgatcgtacgtcaaatg
ttacgtaaagcggtaattaccaacgcttacgactctgagttcttagaaggcgaacaagtg
gaagtggcacgtgtgaaaatcgctaaccgcaaacgtgttgctgaaggcaaaccagaagtg
gaatttgaacgtgaattgcttggtattaccaaagcatcacttgcaacagaatcattcatt
tctgcagcatcgttccaagaaaccactcgtgtgcttaccgaagcagctgtggcaggtaaa
cgtgacgaattacgcggcttaaaagagaacgttatcgttggtcgtttaatcccagcgggt
actggttttgcatatcataaagaacgtgcaaaacgccgtagcctagatgaagaaatcagc
gtagcacaagcggctgtttctgcttcttcttttgcaactgaggaagacatcgaagctgaa
acccaaagctttgttaatgacgaagcaactcaaaaccttgcagcattactaaatgcaggg
tttgatagtgatgatgaagagtag
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