Helicobacter pylori G27: HPG27_1142
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Entry
HPG27_1142 CDS
T00777
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpg
Helicobacter pylori G27
Pathway
hpg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPG27_1142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpg03021
]
HPG27_1142
03400 DNA repair and recombination proteins [BR:
hpg03400
]
HPG27_1142
Enzymes [BR:
hpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPG27_1142
Transcription machinery [BR:
hpg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPG27_1142
DNA repair and recombination proteins [BR:
hpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPG27_1142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACI27892
UniProt:
B5Z8J3
LinkDB
All DBs
Position
complement(1256512..1264929)
Genome browser
AA seq
2805 aa
AA seq
DB search
MERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVE
RVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRK
VPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKIIL
LAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAEPVMVGKEVLLDMLTQLDKNRLEKI
HDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPG
DPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLM
KIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHD
LVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVH
PTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQE
DSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFL
EHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKN
IYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVEAGQIIADGPSMDRGELA
LGKNVRVAFMPWNGYNFEDAIVVSECITKDDVFTSTHIYEKEVDARELKHGAEEFTADIP
DVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVN
KSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRV
SSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNN
FLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVS
NIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLEDKTR
DFAKELRAKMLEIANAINEKDPLTIHVLENCSDEELLEYAKDWSKGVKMAIPVFEGISQE
KFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSL
VTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQ
VGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPKDFSSFQLTLAS
PEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTC
EKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYI
VKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLIT
LLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMMLTVLPVLPPDLRPLVALD
GGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRMLQEAVDVLFDNGRSTNAV
KGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALEL
FKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQA
FHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASG
KAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKIRVLDQGNI
IATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVLVDYVHKVGGIGITATFLDNLKTLGF
RYATKAGISISMEDIITPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEV
NDKMSKEMMTAIAQDKEGFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPII
SNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGI
EITDIAVGSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVIEAGIKSI
TIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGT
ASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNIIANRRNASILVVEPKIKAPFDGELRI
ETVYEEVVVSVKNGEQEAKFVLRRSDIVKPSELAGVGGKIEGKVYLPYASGHKVHKGGSI
ADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAKEKGVIKYYVLEANHLERTHGIKKGD
IVSEKGLFAVIADDNGREAARHYIARGSEILIDDNSEVSANSVISKPTTNTFKTIATWDL
YNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGITSLVVNDYIPSGYKPSLFLEGVNGEE
ARYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKSKDITGGLPRVSELFEARKPKPKDVA
ILSEVDGIVSFGKPIRNKEHIIVTSKDDRSMDYFVDKGKQILVHADEFVHAGEAMTDGVI
SSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFI
EGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEA
SIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIVLRALEDNSKF
NT seq
8418 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggcattacctactctatccccctcaaaattaaagtgcgtttgatcttgtgg
gaaaaagacaccaagagtggcgaaaagaacggcatcaaggatattaaagaacaaagcatt
ttcattcgtgagatccctttaatgacagaacgcacttcgtttattattaatggggtggag
cgcgtggtggtcaatcaactccacagaagccccggtgtgatttttaaagaagaggagtct
agcacttctttaaacaagctcatttacacagggcaaatcatccctgataggggttcgtgg
ttgtattttgaatacgattctaaagatgttttgtatgctcgtatcaataaacgccgtaaa
gtgcctgttaccattttattcagggcgatggattatcaaaaacaagacatcatcaaaatg
ttctacccgcttgttaaagtgcgttacgaaaacgataaatatttgatcccatttgcttca
ttagacgccaatcaaagaatggaatttgacttgaaagatcctcaaggcaagattattctt
ttagcaggaaaaaagctcacttcaagaaagattaaagagcttaaagaaaaccatttagaa
tgggtggaataccctatggatattttactcaatcgtcatttagctgagcctgttatggta
gggaaagaagtcttattggatatgctcactcagctggataaaaacaggttggaaaaaatc
catgatttaggcgtgcaagaatttgtgatcatcaatgatctagctttagggcatgacgct
tccattatccattcttttttggccgattatgagtctttgaaattgctcaagcaaactgaa
aagattgacgatgaaaacgctctagcggcgattcgtatccataaggttatgaaaccaggc
gatcctgttacgactgaagtggctaagcaatttgtcaaaaaacttttctttgaccctgaa
cgctatgatttgaccatggtggggcgcatgaaaatgaatcacaagttaggcttgcatgta
cctgattacatcacgactttaacgcatgaagatattatcactaccgttaaatatctcatg
aaaatcaaaaacaatcagggcaagattgatgacagggatcacttgggcaatcgtaggatc
agagccgttggggaattgttggccaatgaattgcattcaggcttggtgaaaatgcaaaaa
accattaaagacaagctcactaccatgagcggggcttttgattcgctcatgccccatgac
ttggttaattctaaaatgatcactagcaccatcatggaatttttcatgggcggtcagctc
tcgcaatttatggatcaaactaaccctttgagtgaggttacgcacaagcgccgcctttca
gcgctcggtgaagggggattggtgaaagacagggtagggtttgaagccagagatgtgcac
cccacgcattatggccgaatttgtcccattgagaccccagaaggtcaaaatatcggtctg
atcaacaccctttccactttcacaagagtgaatgatttaggctttattgaagccccttat
aaaaaggttgtggatggcaaggtcgtgggtgagacgatttatttgaccgctattcaagaa
gacagccacatcatcgctcccgcaagcacccccattgatgaggagggtaatattttaggc
gatttgattgaaacgcgcgtggaaggcgagattgttttaaacgaaaaaagcaaagttacc
ttaatggatttaagctctagcatgctagtaggggtcgccgcatcgctcattcctttctta
gagcatgatgacgccaaccgcgctttaatggggactaacatgcagcgccaagccgtgcca
ttattaagaagcgacgctcccattgtaggcacagggattgaaaaaattatcgctagggat
tcttggggggcgatcaaagccaatcgtgcaggcgttgtagaaaaaattgattctaaaaac
atttatattttaggcgaaggcaaagaagaagcctatattgatgcgtattctttgcaaaaa
aacttgcgcaccaaccaaaacaccagcttcaatcaagtccctatcgttaaagtgggcgat
aaagtggaagccgggcaaatcatcgctgatggccctagcatggacagaggcgagttagcg
ttagggaaaaatgtgcgtgtggcgttcatgccttggaatggctacaattttgaagacgcg
atcgtggtgagtgagtgcatcactaaagacgatgttttcacttccacccacatttatgaa
aaagaagtggatgctagggagcttaagcatggcgcggaagaatttaccgctgatattcct
gatgtgaaagaagaagcgctcgctcatcttgatgaaagtgggatcgttaaagtcggcact
tatgtgagcgctggcatgattttagtgggcaagacttctcctaaaggcgagattaaaagc
acgcctgaagagcggctcttaagggctatttttggggataaagctgggcatgtggtcaat
aagagtttgtattgcccccccagtttggagggcacggtgattgacgtgaaagtcttcact
aaaaaaggctatgagaaagacgcgcgggttttgagtgcgtatgaagaagaaaaagccaag
cttgatatggagcattttgaccgcttgaccatgctcaatagagaagaattgttgcgcgtt
agttcgctcctttctcaagcgattttagaagagccttttagccataatggtaaggattat
aaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaaccgcttcactttggct
agtttggtcaaaaagtattctaaagaagtgcaaaaccactatgaaatcactaaaaacaat
ttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaagctttctattttagaa
aaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctctatatcgctacaaaa
cgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaataaagggattgtgtct
aatatcgtgccggttgcggatatgccttataccgctgatggcgagcctgtagatattgtc
ttaaaccctttaggcgtgccaagccgcatgaatatcgggcagattttagaaatgcattta
ggcttagtgggaaaagagtttgggaaacaaatcgctagcatgctagaggataaaaccaga
gattttgccaaagaattgcgcgctaaaatgctagaaatcgctaacgccattaatgaaaaa
gaccccttgacaatccatgtgcttgagaattgctctgatgaagagcttttggaatacgcc
aaagattggagcaagggcgttaagatggctatccctgtgtttgaaggcatctcgcaagaa
aaattttacaagctgtttgaattagccaagatcgctatggatggcaaaatggatctgtat
gacgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggctatatgtatatgatc
aaactccaccatttagtggatgaaaaagtccatgccagaagcacaggcccttatagctta
gtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaaaggtttggggaaatg
gaagtatgggccttggaagcttatggcgcagcgcacactctcaaagaaatgcttaccatt
aaatccgatgatattagaggcagagagaatgcttatagggctatcgctaaaggtgagcaa
gtgggcgagagcgaaatccctgagactttctatgttttgactaaagaattgcaatcgctc
gctttggatattaatatttttggggacgatgtggatgaggatggggcgcctaaacccatt
gtcattaaagaagatgacaggcctaaagactttagctctttccagctcactctagccagc
cctgaaaaaatccattcttggagttatggggaagttaaaaagccagaaacgatcaattat
cgcactctaaaacctgaacgagacggcttgttttgcatgaaaatctttggccccactaaa
gattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaagacattggcacatgc
gaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgttttagaatggggcatatt
gaattagccactcctgtagcgcatatctggtatgtcaattccttgcctagccgtatcggc
acgcttttaggcgttaagatgaaagacttagagcgcgtgttgtattatgaagcttatatc
gttaaagaaccaggcgaagccgcttatgacaatgaaggcactaagcttgtgatgaaatac
gatattttgaatgaagagcagtatcaaaatatctcacgaagatacgaagacaggggcttt
gtagcgcaaatgggcggcgaagcgatcaaggatttgttagaagaaattgatttgatcacc
ttgttgcagagtttgaaagaagaagtgaaagacaccaattccgatgcgaaaaagaaaaaa
ctcattaagcgtttgaaagtggtagaaagctttttaaattctggtaacaggcctgaatgg
atgatgctcacggttttaccggtattgccaccggatttaaggcctttagtcgcgctagat
ggtgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgtgtcatcaatcgtaac
caacgcttgaaacgcctaatggagcttggggcgccagaaatcattgtgcgcaatgaaaaa
aggatgttgcaagaagccgtggatgtgctttttgataacggccgcagcaccaatgcggtt
aaaggggctaacaaacgccctttaaaatcgctcagcgagatcattaaaggcaagcaaggg
cgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggcagaagcgtgattgtg
gttgggcctaaccttaaaatggatgaatgcgggttgcctaaaaacatggcgttagaactc
ttcaaaccgcatttgttatccaagcttgaagagagaggctatgccaccacgctcaaacag
gctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgcttgcaagaaatcaca
gaggggtatccggtgctactcaaccgcgctcctaccttgcacaagcaatccattcaagcg
ttccatccaaagcttattgacggcaaagcgatccaattgcacccgttagtgtgttcagcg
ttcaacgccgattttgacggggatcaaatggcggtgcatgtgcctttaagccaggaagcg
atcgctgaatgcaaggtgctcatgctaagctctatgaatatccttttacccgctagcggt
aaagccgtagccattcctagccaggatatggttttagggctttattatctttctttagaa
aagagcggggtcaagggcgagcataagcttttttctagcgtgaatgaaatcatcaccgct
attgacacgaaagaattagacatccacgcaaagattagggttttagatcaagggaatatt
atcgctacgagcgcagggcgcatgatcattaagtctattttgcctgattttatccctacg
gatttgtggaacagacccatgaagaaaaaagatattggcgtgcttgtggattatgtgcat
aaagtcggcggtatcggcattactgcaacctttttggataatttaaaaacgcttggcttt
aggtatgcgactaaggctggtatttctatctctatggaagatattatcacgccaaaagac
aagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatccagcaacaatacgat
caagggctgctcactgaccaagagcgttacaataagatcattgacacttggactgaagtc
aatgacaaaatgagtaaagaaatgatgaccgctatcgcgcaagataaagagggctttaac
tctatttatatgatggcagatagcggcgcaaggggtagtgcggcgcaaatccgtcagctt
tcagcgatgaggggtcttatgacaaagccggacggcagcatcattgaaacgcccattatt
tctaactttaaagaggggttgaatgtcttagaatactttaactccacgcatggcgctaga
aagggcttagcggatacagcgctaaaaaccgccaatgcggggtatttgacaagaaagctc
attgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggcacgcatgaagggatt
gaaatcacggatattgcggtggggagtgaattgattgaacctttagaagagcgtattttt
gggcgcgttttattagaagatgtgatcgatcccattacgaatgaaatcttgctttatgca
gacactttgattgatgaagagggcgctaaaaaggtgattgaagccgggattaaatccatt
acgatccgcaccccagtaacttgtaaagcgcccaagggcgtgtgcgcgaaatgctatggc
ttgaatttaggcgaaggcaagatgagctatccaggtgaagcggtgggcgtggtagccgcg
caatctattggggagcctggaacgcagctcactttaaggactttccatgtgggcgggaca
gcgagcaggagtcaggatgagcgcgaaattgtagcgagcaaagaaggttttgtgcgtttt
tacaaccttaggacttacacgaataaagagggtaaaaacattatcgctaaccgccgtaac
gcttctattttagtggtagagcctaagattaaagcgccttttgatggggaattacgcatt
gaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgagcaagaagctaaattc
gttttaagaagaagcgatattgtcaagccaagcgaattagccggcgttggcggtaagatt
gaggggaaagtgtatttgccttatgctagtgggcataaggtgcataagggggggagtatc
gctgatattatccaagagggctggaatgtgcctaatcgcatcccttacgcgagcgaattg
ctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaagaaaaaggcgtgatc
aaatactatgttttagaggctaaccatttagagcgcacccatgggatcaaaaagggcgat
attgtgagcgaaaaaggcttgtttgcggtgatagctgatgataatggtagggaagccgct
cgccattatatcgctaggggttctgagattttgattgatgataatagtgaagtgagcgct
aatagcgtgatttctaaacccacgactaacactttcaaaacgattgccacatgggatctt
tacaacacccctatcattgcggactttaagggtaaggtgagttttgtggatattatcgca
ggggttacggtcgctgaaaaagaagacgaaaataccggtatcacaagcctagtggtgaat
gattacatcccaagcggatacaaaccaagcttgtttttagaaggggttaatggcgaagaa
gcgcgttatttcctagagccaaaaacttctatcgccattagcgatggctctagcgtggag
caggctgaagtgttagcgaaaatccctaaagcgaccgttaaatctaaagacattaccgga
ggtctcccaagggtttctgaactctttgaagcgagaaaacccaagcctaaagatgtggcg
atcctttctgaagtggatgggattgtgagttttggcaaacccattcgcaataaagaacac
atcatcgtaacttctaaagatgaccgttccatggattattttgtggataaaggcaagcaa
attttagtgcatgctgatgaatttgtgcatgcaggagaggcgatgacagatggagtaatc
tcaagccatgatattttaaggatcagcggcgaaaaagagctttataaatacattgtgagc
gaagtccagcaagtgtatcgcaggcagggggtgagcattgcggacaagcacattgaaatc
attgtttctcaaatgctaaggcaagtgcgtattttagacagtggggatagcaagtttatt
gaaggggatttagtcagtaaaaaactattcaaagaagaaaacgctcgtgtgatcgcttta
aaaggcgagccagcgatcgctgaaccggtgcttttagggatcaccagagcggctattggg
agcgatagtatcatctcagcggcctctttccaagaaacgactaaagttttaacagaagcc
agtatcgctatgaaaaaagactttttagaagacttgaaagaaaatgtggtgttaggaagg
atgatccctgtgggaacgggcatgtataagaataaaaaaatcgtgctgagagcgcttgag
gataactctaaattttga
DBGET
integrated database retrieval system
