Helicobacter pylori Aklavik117: HPAKL117_05745
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Entry
HPAKL117_05745 CDS
T02352
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpya
Helicobacter pylori Aklavik117
Pathway
hpya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPAKL117_05745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpya03019
]
HPAKL117_05745
03016 Transfer RNA biogenesis [BR:
hpya03016
]
HPAKL117_05745
Enzymes [BR:
hpya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPAKL117_05745
Messenger RNA biogenesis [BR:
hpya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPAKL117_05745
Transfer RNA biogenesis [BR:
hpya03016
]
Prokaryotic type
tRNA degradation factors
HPAKL117_05745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFX91534
UniProt:
K7Y6J0
LinkDB
All DBs
Position
complement(1212022..1214088)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKD
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttattaccattaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcacagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagagcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccca
aaagattaccgctaccccacacagatcactttaatggttttaagccatgatattgaaaac
gacttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcatcaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtctggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttaatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctatcggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagat
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggtttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagcc
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcctacaacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttgaaaacgaaggaatttattttaaactacttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtgttagaagctcaagtgaagcgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcctgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgccttggatttggcgtaa
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