Helicobacter pylori OK310: HPOK310_0350
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Entry
HPOK310_0350 CDS
T02542
Symbol
recJ
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl03410
Base excision repair
hpyl03430
Mismatch repair
hpyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPOK310_0350 (recJ)
03430 Mismatch repair
HPOK310_0350 (recJ)
03440 Homologous recombination
HPOK310_0350 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyl03400
]
HPOK310_0350 (recJ)
DNA repair and recombination proteins [BR:
hpyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPOK310_0350 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPOK310_0350 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPOK310_0350 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Fe-S_biosyn
DUF695
Motif
Other DBs
NCBI-ProteinID:
BAM97778
LinkDB
All DBs
Position
complement(355496..357046)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKLSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIINESHQVLRFKDKECVKEAIY
FNAERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcactcaaaatcata
gaagccatgcacgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgtccgcatt
gcaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataatgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaactacacccttatcatcacagatcatcattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttctagga
aaagaaaaaagccattctagcgagttgctgtgcttagcgggtgtcgccacgatcgcagac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttctttcagtatcgctcccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggtcggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcta
agcctggtttttacctttaaagaaggggtgtataaagggagtggtcgcagctcttcaaat
attgatttgattgatgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgtggtttgagcgttggaaaaaacaatatcatctcactctttgaaacttta
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagtgcaaaatttagaagtcatagaagaaaaaatcatt
aacgaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacgctgagcggtttttgaaagcgggcgaaaaggtgagcgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag
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