Herbaspirillum rubrisubalbicans: Hrubri_0973
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Entry
Hrubri_0973 CDS
T04238
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII, large subunit protein
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Hrubri_0973 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_0973 (xseA)
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Hrubri_0973 (xseA)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Hrubri_0973 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ALU88189
UniProt:
A0A0U3JNG5
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All DBs
Position
complement(1143471..1144823)
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AA seq
450 aa
AA seq
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MPAATATDGGPPMLTVSALNQAVARMLERNFPLIWVKGEISNFTRAASGHWYFNLKDDGA
QVRAVMFKGRAQYAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFVQ
LKERLEREGLFDRERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPV
QGEGAAQRIATAIQTASARAECDVLLVCRGGGSIEDLWSFNEEVVARAIVAAAMPVISGV
GHETDFTIADFAADLRAPTPTAAAELAATAREDWLAELRSHALDLTRALRRSLTDKAQSV
DWLARRLVNPGAYIQHERVKLAALQTRLSHATRVPLTRMRHRLQQLSTHLAHQIPDTAHA
RRDLHDLARRLQGAQAAQQLRQRQVLAGWHTQLELLNPQRTLERGYAIVSDRQGRVLHAP
AELAARSEVTIRLAQGSAEVGIASVQPRLD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgccagcggccactgccaccgatggaggcccgcccatgctgacggtctcggccttgaac
caggcggtggcgcgcatgttggagcgcaacttcccgctgatctgggtcaagggcgagatt
tccaatttcacccgcgccgcctccggccactggtatttcaacctcaaggatgacggcgcc
caggtgcgcgcggtgatgttcaagggccgcgcccagtacgctggcttcatgccgcgcgag
ggcgataaggtcgaggtgcgcaccctggtcacgctctacgccccgcgtggcgactaccag
ttgaacgtggaagcgatccgccgctccggcgtgggcgacctgtatgcggccttcgtacaa
ctgaaggagcgcctggaacgcgaaggcctgttcgaccgtgagcgcaagcgcgccctgccg
ggcttcccgcgccgcatcggcatcgtcaccagcccccaggcagcagccttgcgcgatgtc
ttgaccaccctgcgccgccgcgccccgcatgtggaagtagtgctctaccccaccccggtg
cagggcgaaggcgcagcccagcgcatcgccacggccatccagaccgcctcggcgcgtgcc
gaatgcgatgtgctgctggtctgccgcggcggcggcagtattgaagacctgtggtccttc
aatgaagaggtggtggcgcgcgccatcgtggccgccgccatgccggtcatctcgggcgtg
ggccacgaaaccgatttcaccatcgccgacttcgccgccgacctgcgcgcccccaccccc
accgccgccgccgagctggccgccaccgcccgcgaggattggctggccgagctgcgcagt
cacgccttggacctgacccgcgccctgcgccgcagcctgaccgacaaagcccagagcgtg
gactggctggcacggcgcctggttaatcccggcgcgtatatacagcatgagcgggtcaag
ttggcagcgctgcaaacccggctctcgcacgccacccgcgtaccgctgacccggatgcgc
caccgcctgcagcaactctccacccatctggcgcaccagatccccgacaccgcccacgcc
cgacgcgacctgcacgacctggcgcgccgcctgcaaggcgcccaggcagcccagcaactg
cgccagcggcaggtgctggcgggctggcatacccaactcgaactgctcaacccgcaacgc
accctggaacgcggctacgccatcgtcagcgaccgccagggccgcgtcctgcacgccccg
gccgaactggccgcgcgcagcgaggtcaccatccgcctggcccagggcagcgccgaggtc
ggcattgccagcgtccagccgcggctggattga
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