Halobacterium salinarum R1: OE_3085R
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Entry
OE_3085R CDS
T00662
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsl
Halobacterium salinarum R1
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsl03016
]
OE_3085R (rtcB)
Enzymes [BR:
hsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OE_3085R (rtcB)
Transfer RNA biogenesis [BR:
hsl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OE_3085R (rtcB)
Prokaryotic type
tRNA splicing ligases
OE_3085R (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAP14044
UniProt:
B0R5M7
LinkDB
All DBs
Position
complement(1070440..1071942)
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AA seq
500 aa
AA seq
DB search
MSTFDADGHRLTEVEPDVWALADTGDESVPARVLANRSLLAQISTDNTLTQLRNVAGMPG
AVAPALCMPDGHQGYGFPVGGVAAFDAEDGCISPGGVGFDINCGVRMLTTTLTYDDVKGR
EAALVDALYDAVPCGLGGGGVHDGTHADLDAALERGIDWCVEEGYAVPADRRHCEDEGQR
LDADLDAVSKKARDRGASQMGSLGSGNHFLEVQRVTDVYDDDTAAAFGLAEDQVVVLIHC
GSRGLGHQICSDYLRRIEQEHPDFLASLPNKDLAAAPAGSELAASYYGAMCAAINFAWVN
RQLITHAVRETFADVFDAPDWEALGMDLLYDVSHNIAKRETHAVVETEDGYSLAGDGERV
ERELFVHRKGATRAFPAGHPEVPAAYREVGQPVIIPGSMGAGSYVLRGGSQSLGRTFGST
AHGAGRLMSRTQAKDEYQGGDVQDALEADDDIHVKAASGATIAEEAPGVYKDIDDVVDVS
AGLGVGDPVVRTYPVCNVKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccttcgacgccgacggccaccggctcaccgaagtcgagccggacgtctgggcg
ctcgcggacaccggcgacgagtcggtgccggcgcgcgtgctcgccaaccgcagcctcttg
gcgcagatcagcaccgacaacacgctcacccagctccgcaacgtcgccggcatgcccggt
gccgtcgccccagcgctctgcatgcccgacggccaccagggctacgggttccccgtcggc
ggcgtcgccgccttcgacgccgaggacggctgcatctcgccgggcggcgtcggcttcgac
atcaactgcggcgtccgcatgctgaccacgacgctcacctacgacgacgtcaagggccgc
gaagcggcgctcgtggacgcgctgtacgacgccgtcccctgcgggctgggcggcggcggc
gtccacgacggcacgcacgccgacctggacgccgccctcgaacgcggcatcgactggtgt
gtcgaagaagggtacgccgttcccgcggaccgccgccactgcgaggacgaggggcagcgg
ctcgacgccgatctggacgccgtctcgaagaaggcccgcgaccgcggcgcgagccagatg
gggtcgctcgggtcgggcaaccacttcctggaagtccagcgcgtcaccgacgtctacgac
gacgacaccgccgcggcgttcgggctcgccgaggaccaggtcgtcgtgttgatccactgt
ggctcccgcggcctgggccaccagatctgttcggactacctgcgccgcatcgaacaggag
caccccgacttcctggcgtcgctgccgaacaaggacctcgcagccgcgcccgcgggctcc
gagctcgccgcgtcgtactacggcgcgatgtgcgcggccatcaacttcgcgtgggtgaac
cgccagctcatcacccacgccgtccgggagacgttcgccgatgtcttcgacgcgcccgac
tgggaggccctcgggatggacctgctgtacgacgtgtcccacaacatcgcgaagcgcgaa
acccacgcggtcgtcgagaccgaggacggctacagcctcgctggggacggcgagcgcgtc
gagcgcgagctgttcgtccaccggaagggcgcgacgcgcgcgttccccgccggccacccg
gaggtgccggcggcctaccgggaggtcggccagccggtcatcattccggggtcgatgggc
gcgggcagctacgtgctgcgtgggggcagccagtcgttgggccggacgttcggttcgacc
gcccacggcgcgggccgcctgatgagccgcacccaggccaaagacgagtaccagggcggc
gacgtgcaggacgccctcgaagccgacgacgacatccacgtgaaggcggcctcaggcgcg
acgatcgcggaggaagcgcccggcgtctacaaggacatcgacgacgtggtcgatgtgtca
gccggcctgggcgtgggcgaccccgtcgtccgcacgtatccggtctgcaacgtcaagggg
tag
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