Hydrogenobacter thermophilus: HTH_0365
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Entry
HTH_0365 CDS
T01167
Symbol
vacB
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hth
Hydrogenobacter thermophilus
Pathway
hth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HTH_0365 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hth03019
]
HTH_0365 (vacB)
03016 Transfer RNA biogenesis [BR:
hth03016
]
HTH_0365 (vacB)
Enzymes [BR:
hth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HTH_0365 (vacB)
Messenger RNA biogenesis [BR:
hth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HTH_0365 (vacB)
Transfer RNA biogenesis [BR:
hth03016
]
Prokaryotic type
tRNA degradation factors
HTH_0365 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
TFIIE_beta
TBPIP
RNase_II_C_S1
z-alpha
Motif
Other DBs
NCBI-ProteinID:
BAI68831
UniProt:
D3DG79
LinkDB
All DBs
Position
369147..371246
Genome browser
AA seq
699 aa
AA seq
DB search
MAQEHITEEDVLELLKKSKKPLHFEQIVKELELDKEGKKKLKKVLKTLKRSNKLTVERGR
YKLAEEEIVVGTVIPYPAGFGFLQIGEGKKDIYIPPFEMVKVFGGDVVKARVVEFKGKKE
VRILQVIKRGKREIICKIVKGKTCYAIPLYDNPHQKIQLSQESCKDLKKDTVVVVGIKEY
PRAKAPARGYIKEVIGHPKERVLTIELLIRKYDLPLSYPEEVIKEAQKFRLHIKKELKNR
KDLRDQICFTIDPERARDFDDAVAIQMTPEGHYRLWVHIADVSYFVKEGSHIDEEAFKRG
FTFYLPDRALHMLPEKLSSDLCSLKPNEDRLTFTCEMVFDQKGNLLNYDIYESVIRSKAR
LTYDEALRLIVGDPALEEKYPHLVEPLRLMENLYRILSKKRWEKGSIDFDLPESEVIVDE
FGQPVAVVPYERHIAHRIIEHFMISANETVAMHLEHLGYPCLYRVHEKPDPEKVENLIEI
LAGLGYKVKRVSLEPKFFQKIIEDFEGRPEENLVRFLTLRSMKRAYYSPHNVGHFGLASE
HYAHFTSPIRRYTDIIVHRILKKAIKGEDVPYEQMVSYLEMAGQYLSERERLADNVEREA
IELLKARLMKGHIGEAFAGIITGVVPFGFFVEIQDYLVEGLVSINTLVDDQYIYDEPAHR
LVGVRTGKVFRLGDVVKVKVVGVDEERGRIELELVKEEG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagagcatataacagaggaggatgttcttgagctactaaaaaaatccaaaaaa
ccgctacattttgagcagatagttaaggagcttgaacttgacaaagagggaaagaaaaaa
cttaaaaaggtcttaaagactctaaagaggtccaacaagcttacggtagaaaggggcagg
tacaagcttgcggaggaggagatagtcgttgggacggtgatcccataccctgctggcttt
ggatttctccaaataggtgagggcaaaaaagacatatacattccaccctttgagatggta
aaggtttttggtggggatgtggtaaaagcaagggtggtggagtttaagggaaagaaggag
gtccgaatacttcaagttatcaagagaggcaaaagagagataatatgtaagatagtaaaa
ggtaagacttgctacgctatacctctttacgataacccacaccagaagatacagctcagc
caagagagttgcaaagatctcaaaaaagacactgttgtagtggtgggtataaaggagtat
ccaagggcaaaagctccagccagaggatacataaaagaagttatagggcatcccaaggag
agggttttaacgatagagctgctcataagaaagtacgaccttccgctatcgtatcctgaa
gaggtgataaaagaggctcagaaattcaggctccatataaagaaagagcttaaaaatagg
aaggacctgagggaccaaatatgctttaccatagaccccgagagagcaagggactttgac
gatgctgtagctatacagatgacgccagaagggcattacagactttgggttcacatagcg
gatgtatcttactttgtaaaggaaggctcacacatagatgaggaagcctttaagagaggt
tttaccttttaccttcctgacagagctttgcacatgcttcccgaaaagctctcttcggac
ctttgcagtttaaaacccaacgaggataggctcacctttacatgtgagatggtctttgac
caaaagggaaaccttttaaactacgacatttacgaaagcgtaataaggagtaaggcaagg
cttacctatgacgaggctctaaggctcatagtgggcgatccggcgctggaggaaaagtat
ccgcacctggtggagcctctcagactcatggaaaacctttaccgtatactctccaaaaaa
cgttgggagaaggggagcatagactttgaccttccagaatcagaggtcatagtggacgag
tttggacagcctgtggctgtggttccctacgagaggcacatagctcacaggataatagag
cattttatgatatccgccaatgagacagtagccatgcatttggagcatcttggctaccca
tgtctttacagggtgcacgaaaaacccgacccagaaaaggtagaaaaccttatagaaatc
cttgccggtcttggatacaaagtaaaaagagtctctcttgagcctaagttttttcaaaag
atcatagaagattttgaaggaagacccgaggagaacttggtgaggtttcttacactaaga
agtatgaaaagagcctactactcgcctcacaatgtggggcattttggcttggcatctgag
cattacgctcactttacatcacccataaggcgatacacagacatcatagtccacagaatt
ctcaagaaggctataaagggagaagatgtgccttatgaacagatggtatcttaccttgag
atggcgggacagtacctctctgagcgggagagattggcagataatgtggagagagaagct
atagaacttctcaaggcaagacttatgaaggggcacataggcgaggcttttgcgggtata
ataacaggagtggttccctttgggttttttgtggaaattcaggactacttagtggagggg
cttgtgagtataaacacgcttgttgatgaccagtacatatacgatgaaccagctcacaga
cttgtaggcgtaagaaccgggaaagttttcagattgggtgatgtggtgaaggtgaaggtg
gtaggcgttgatgaggagaggggcaggatagagctggagcttgtaaaggaggaaggatga
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