Haloquadratum walsbyi C23: Hqrw_3289
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Entry
Hqrw_3289 CDS
T01942
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hqrw_3289 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hwc03019
]
Hqrw_3289 (rnj)
Messenger RNA biogenesis [BR:
hwc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hqrw_3289 (rnj)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
CCC41067
UniProt:
G0LLU7
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All DBs
Position
complement(2301133..2302485)
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRTGDDIVIFDMGLNLSQVLIHDNVETETMHSLDLIDMGA
IPDDRIMSDLEGDVQAIVPTHGHLDHIGALSKLAHRYDAPIVGSPFTIELVKQQIDSENK
FNVNNDLLKMSAGEAMSIGESGNVELEFVHVTHSIIDAINPVIHTPEGAIVYGLDKRIDH
SPVLEDPIDMKRFREIGREDNGVLCYIEDCTNAGRKGRTPSESHARSHLEDTIRSIEDYD
GGIVATTFSSHVSRVSSLVEFAKDIDRQPVLLGRSMEKYSGAAERLGFVDLPDDVGMYGH
RKSVDRTFKRIMKEGKENYLPIVTGHQGEPRAMLTRMGRGETPFELENGDKVIFSARVIP
EPTNEGQRYQSERLLKMQGARIYDEIHVSGHLREEGHYQMLDALQPQHIIPAHQNLEGLS
PYVDLAESQGYALGRDLHVTRNGNIVQLVG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaattgcaacaatcggcggatatgaagaagtcggtcgacagatgacggct
gtccgaacaggcgacgatatcgtcatctttgatatggggctgaatcttagtcaggtcctc
atccacgataatgtggagaccgaaacgatgcatagtcttgatctaattgacatgggcgca
attccagatgatcggattatgtccgatcttgagggtgatgtgcaagcaatcgtcccaact
catggtcatcttgaccatattggcgcgctttcaaagcttgcccatcgatatgacgctcca
attgtcggctcaccattcacgatcgagttagtaaaacaacaaattgacagtgaaaataaa
tttaatgttaataatgacctgctgaaaatgtccgcaggcgaagcaatgtcgattggtgag
agtgggaatgttgaacttgaatttgttcatgtcacacattcgattattgatgcgatcaat
ccagtcattcacacacctgagggagccattgtctatggtcttgataaacgcatcgatcac
tcaccagtcttagaggatcctatagatatgaaacggttccgcgagattggacgtgaggat
aatggtgttctttgttatattgaggattgtacgaacgcgggtcgaaagggacgcactccg
tctgagtcacatgctcggtctcatcttgaggacacaatcagatcaatcgaagattatgat
ggcggaatcgttgcaacgacgttctcatcacatgtgtctcgtgtctcatcgcttgtcgaa
tttgcaaaagatattgaccgacagcccgtacttctcggtcggtcgatggaaaaatactct
ggagctgcagaacgacttggatttgttgaccttccagatgatgttggaatgtatggtcat
cgaaagtctgttgatcggacatttaaacgcatcatgaaagaaggcaaagagaattatctc
ccaatcgtaaccggtcatcaaggtgagcctcgagcaatgcttacacgaatgggacgtggt
gaaacgccatttgagcttgaaaatggtgataaggttattttctctgcacgagtgattcct
gaaccaacgaatgaaggtcagcgctatcaatctgaacgccttctaaagatgcagggtgcg
cgaatttatgatgaaatccacgtctcaggtcatctacgcgaggaaggacattatcagatg
cttgatgcgcttcagccacagcatatcatcccagctcatcaaaatcttgaggggctgtcg
ccatatgttgacctcgctgagtcacagggatatgcactcggtcgcgacctccatgtgacg
cgtaacggcaatattgttcagctggtggggtaa
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