Intrasporangium calvum: Intca_2450
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Entry
Intca_2450 CDS
T01385
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ica
Intrasporangium calvum
Pathway
ica03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Intca_2450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ica03021
]
Intca_2450
03019 Messenger RNA biogenesis [BR:
ica03019
]
Intca_2450
Transcription machinery [BR:
ica03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Intca_2450
Messenger RNA biogenesis [BR:
ica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Intca_2450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADU48957
UniProt:
E6S6G8
LinkDB
All DBs
Position
complement(2739555..2741741)
Genome browser
AA seq
728 aa
AA seq
DB search
MSETTTRPVSGLSAMKLDELKTVATSMGIKGTARMRKSDLVDAIKARQSGGSPAAETASS
APATPATPAASSVPAASSAPVRASRRATREAGSAAVPDSGSPVVQARSEDVAPSIPQPDS
ERGSTEVTAPAARHGGERTSGRRTGQPDRAQRAAEAVAAVSERQPLDRRAGDRPEADRPE
TDRPEVDRPEHEGRRQRERRDRRDRQQERDTRGNAQEPTSRQERNPRGANQERDTRQDAR
PERDPRGTSPERDTRDTIQERDGRQDARQERDFRDTRDGQDHGDRDGQDNRDTNREGQQA
GRYDDDDRGNRRSRNRQRSRDRKRGRGVGQEWAEAEPQIGDDDVLVPVAGILDVLENYAF
VRTSGYLPGPSDVYVPLGMVKKHGLRKGDAVTGAVKALREGEQPTGNVGRQKFNALVRLD
SVNGQSADDALKRLEFGKLTPLYPQQRLRLETESGQLTTRIIDLVAPIGKGQRGLIVAPA
KAGKTMVMQALANAITTNNPECHLMVVLVDERPEEVTEMQRAVKGEVIASTFDRPADDHT
TVAELAIERAKRLVELGHDVVVLLDSITKLGRAYNLSAPASGRILSGGVDSAALYPPKKF
FGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELKLDRQLANRRIFPSVDI
NASGTRREEILLASEELKIMWKLRRVLGGLDSQQAIELLLDRLKKTKTNYEFLTQVQQTS
SARLDDEA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaaacaaccacccgtcccgtgtcaggtctgtccgcgatgaagctggacgagctg
aagaccgtggccacgtcgatgggcatcaagggcaccgcgaggatgcgcaagagcgacctc
gtcgacgccatcaaggctcgtcagtccggcggttcaccggctgcggagacggcttcgtcc
gcccctgcaacccctgcaaccccggcggcttcgtccgtccccgcggcttcgtctgctccg
gtgcgcgcttcacgccgcgcgactcgggaagccgggtcggccgcagtgcccgacagcgga
tcccccgtggtccaagcgcgctcggaagacgtggcgccgagcatccctcagcccgactcc
gagcggggcagcaccgaggtgacggccccggccgcccgccacgggggtgagcggacctcg
ggacgccgcaccggtcaacccgaccgggcccagcgcgccgccgaagccgtggcagccgtg
tccgagcggcagccactggaccgtcgtgccggcgaccgtccggaggccgaccgcccggag
accgaccgtccggaggtcgaccgcccggagcacgagggccgacgccagcgggagcgccgc
gaccgtcgtgaccgtcagcaggagcgcgacactcgcggcaacgcccaggagcccacctcc
cgtcaggagcgcaacccgcgtggcgccaaccaggagcgcgacacccgtcaggacgcgcgt
ccggagcgcgacccgcgtggcaccagcccggagcgggacactcgcgacaccatccaggag
cgtgacggccgtcaggacgcccgtcaggagcgcgacttccgcgacacccgggatggccag
gaccacggcgaccgcgacggccaggacaaccgcgacaccaaccgcgagggccagcaggcc
ggtcggtatgacgacgacgaccgcggcaaccgtcgcagccgcaaccggcagcgcagccgc
gaccgcaagcgcggccgaggcgtgggccaggaatgggccgaggcggagccgcagatcggc
gacgacgacgtcctcgtcccggtcgccggcatcctcgacgtcctcgagaactacgccttc
gtgcgcacctccggctacctgcccggtccgagcgacgtctacgtcccgctggggatggtc
aagaagcacggcctgcgcaagggcgacgccgtgacaggtgcggtcaaggcgttgcgcgag
ggcgagcagccgaccggcaacgtgggccgccagaagttcaacgccctcgtccgactcgac
agcgtcaacgggcagagtgcggacgacgcgctcaagcggctggagttcggcaagctgacc
ccgctctacccgcagcagcgactgcgcctcgagaccgagtctggacagctgaccacccgg
atcatcgacctggtggcgcccatcggcaagggccagcgtggtctcatcgtggccccggcg
aaggccggcaagacgatggtgatgcaggcgctggccaacgcgatcacgacgaacaacccg
gagtgccacctgatggtcgtgctcgtcgacgagcgccccgaagaggtcaccgagatgcag
cgcgcggtcaagggtgaggtcatcgcctcgaccttcgaccgtcccgccgacgaccacacg
accgttgccgagctcgccatcgagcgggccaagcgcctcgtggagctcggccacgacgtc
gtcgtgctcctcgactcgatcaccaagctgggccgggcctacaacctgtccgccccggcg
agcggtcggatcctgtccggcggtgtcgactcggcagcgctctacccgccgaagaagttc
ttcggggcggcgcgcaacatcgagaacggtggctcgctgaccatcctggccacggctctc
gtcgagaccgggtcgaagatggacgaggtgatcttcgaggagttcaagggcaccgggaac
atggagctcaagctcgaccgtcagctcgccaaccggcgcatcttcccctcggtcgacatc
aacgcctcgggcacccgtcgtgaggagatcctcctggcgagcgaggagctgaagatcatg
tggaagctccgtcgcgtcctcggcggtctcgacagccagcaggccatcgagctgctcctc
gaccgcctcaagaagacgaagacgaactacgagttcctcacgcaggtccagcagacgagc
agcgcccggctcgacgacgaggcctga
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