KEGG   Isoptericola dokdonensis: I598_0187Help
Entry
I598_0187         CDS       T04384                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ido  Isoptericola dokdonensis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ido00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    I598_0187
Enzymes [BR:ido01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I598_0187
DNA repair and recombination proteins [BR:ido03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I598_0187
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(203023..205596)
Genome map
AA seq 857 aa AA seqDB search
MSPQTQRVTVAGRTLSLSNLDKVLYPATGTTKADVLHYLARVAPALVAHAAHRPATRKRW
PDGTGGQPFFQKNLDASTPSWVPRRTIRHRSSSNDYVLVDDLATLTWLGQTATLEIHVPQ
WQFGRTGTPLPPDRLVLDLDPGPGVGLPECAQVARWAREILQGMGLEPLPVTSGSKGIHL
YAPLTGHGTLTSDDVSAVARELARHLATEHPDLVVADMKKSVRAGKVFIDWSQNNGAKTT
IAPYSLRGRDRPTAAAPRTWAELDDPDLRHLTADEVADRYERDGDLLAPLLAGHLAQLEP
TPERLATFTRLETYRAKRDPDRTPEPFDDGTGPAVTTDAPTFVVQEHHARRLHWDFRLEH
DGVLVSWALPRGEPTDPGRNHLAVQTEDHPLAYGAFEGSIPAGEYGAGEVTLWDTGTYEL
EKWRDDEVIVTLHSERRGSRRLALIRTGGRGGDDENSWLIHRTKEQPHDARPTGPEPAAD
APGPGPHPGPGAADDASGDAPPAPPPAGTTPGPAPRPMLATTASPGELSRLDSAEWAFEV
KWDGFRAIAEIFPATDDDGPEVRLTSRSGRDLTATFPELAALADAVPAAELPLAVDGEIV
ALDPAGRPSFRRLQQRANLVRPREVEKARRTVGVDLVVFDVLRVAGVDVTDHPYDERRTI
LDRVLEPRRPVHVPAALDGTVAEASAESRRLGLEGLVAKRRRAPYTAGHRSRDWLKVKHV
GGQECVVVGWRPLRAGTPTEDARSVGGLLLAVPDGGGLRYVGRVGTGLSDRERRELATRF
AADEVPDAPVPGVPRPDAVGARWVRPATVVEVVHAGWTGDEPGEGSLRHTVWRGLRPDKD
PSAVVVEDAGVAPPATD
NT seq 2574 nt NT seq  +upstreamnt  +downstreamnt
gtgagcccgcagacccagcgcgtgaccgtcgcgggccgcaccctgtccctgtccaacctc
gacaaggtgctctaccccgcgaccggcaccaccaaggccgacgtcctgcactacctcgcc
cgggtcgcccccgcgctcgtcgcccacgccgcgcaccgccccgcgacccgcaagcgctgg
cccgacggcaccggcgggcagccgttcttccagaagaacctcgacgcctccaccccctcg
tgggtgccgcggcgcaccatccgccaccggtcgtcgtccaacgactacgtgctcgtcgac
gacctcgccaccctcacctggctcggccagaccgccaccctggagattcacgtgccgcag
tggcagttcggccgcaccggcaccccgctgccgcccgaccggctcgtcctcgacctcgac
ccggggcccggagtcggcctgcccgagtgcgcgcaggtcgcccgctgggcgcgcgagatc
ctccagggcatgggcctcgagccgctgcccgtcaccagcgggtcgaagggcatccacctg
tacgcgccgctcaccggccacggcacgctcaccagcgacgacgtctcggccgtcgcccgc
gagctcgcgcggcacctcgccaccgagcaccccgacctcgtcgtcgccgacatgaagaag
tcggtgcgcgccggcaaggtgttcatcgactggtcgcagaacaacggcgccaagacgacg
atcgccccctactccctgcgcgggcgcgatcgtcccaccgcggcggcgccccgcacgtgg
gccgagctcgacgacccggacctgcgccacctcaccgccgacgaggtcgccgaccgctac
gagcgcgacggcgacctcctcgccccgctgctcgccggccacctcgcccagctcgaaccg
accccggagcgcctcgccaccttcacccggctggagacctaccgcgccaagcgcgacccc
gaccgcacccccgaacccttcgacgacggcaccggacccgccgtcaccaccgacgccccg
acgttcgtcgtccaggagcaccacgcccgccgcctgcactgggacttccgcctcgagcac
gacggcgtgctggtgagctgggcgctcccccgcggcgagcccaccgaccccggccgcaac
cacctcgccgtgcagaccgaggaccacccgctcgcctacggcgccttcgagggctccatc
cccgccggggagtacggcgccggggaggtcaccctctgggacaccggcacctacgagctg
gagaagtggcgcgacgacgaggtcatcgtcacgctgcacagcgagcggcgtggctcgcgg
cggctcgccctcatccggaccggcgggcgcggcggcgacgacgagaactcctggctgatc
caccgcaccaaggagcagccgcacgacgcccggccgacgggtccggagcccgccgccgac
gccccgggtcccggcccgcacccgggccccggcgcggcggacgacgcgagcggtgacgcc
ccgcccgctcccccgcccgccggcacgacgccgggccccgcgccccgcccgatgctcgcc
accacggcgtcgccgggcgagctctcccgcctggactccgccgagtgggcgttcgaggtc
aagtgggacgggttccgcgcgatcgcggagatcttccccgccaccgacgacgacgggccg
gaggtccggctcacgtcccggtcgggccgcgacctcacggccacgttccccgagctcgcg
gcgctcgcggacgccgtgcccgccgccgagctgccgctcgccgtcgacggggagatcgtc
gcgctcgaccccgccgggcggccgagcttccggcggctccagcagcgggcgaacctcgtc
aggccccgcgaggtggaaaaggcacgccgcaccgtcggcgtcgacctcgtcgtgttcgac
gtgctgcgcgtcgccggggtcgacgtcaccgaccacccctacgacgagcgccgcacgatc
ctggaccgcgtgctggagccgcgacgcccggtgcacgtgccggccgccctggacgggacc
gtggcagaggcgtcggccgagtcgcggcggctggggctggagggcctggtggccaagcgc
cgacgcgccccgtacacggccgggcaccgctcgcgcgactggctcaaggtcaagcacgtg
ggcggccaggagtgcgtcgtggtgggctggcggccgctgcgcgccggcaccccgaccgag
gacgcccggtcggtgggcgggctcctgctcgcggtgcccgacggcggtggcctgcggtac
gtggggcgcgtcgggacgggcctgtcggaccgcgagcgccgcgagctcgcgacccgcttc
gcggcggacgaggtgcccgacgcccccgtgccgggcgtcccgcgccccgacgccgtcggt
gcgcgctgggtgcggcccgccaccgtggtggaggtggtccacgccggctggacgggcgac
gagcccggcgaggggagcctgcggcacacggtgtggcggggactgcgaccggacaaggac
ccgtccgccgtcgtcgtcgaggacgcgggcgtggcgccgccggccaccgactga

DBGET integrated database retrieval system