Isosphaera pallida: Isop_2011
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Entry
Isop_2011 CDS
T01407
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03420
Nucleotide excision repair
ipa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Isop_2011
03430 Mismatch repair
Isop_2011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_2011
Enzymes [BR:
ipa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Isop_2011
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Isop_2011
MMR (mismatch excision repair)
Other MMR factors
Isop_2011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
HHH
HHH_5
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADV62591
UniProt:
E8R372
LinkDB
All DBs
Position
2937768..2939828
Genome browser
AA seq
686 aa
AA seq
DB search
MARRITLRKAAGRSDWEAMLVGLNEVQRLAAAAPDGVNLILAGPGSGKTRVITHRVAWLI
GQGVAPESILLTTFTRRAAREMVARLSSLVGPAADQVWAGTFHQIANRLLRRREFAEALG
YQSNFSILDAEDALDLVAQAIDELGLGTRGRSSTRRGGSESGCGEAGGPLKPSTVQAALS
LALNTRTGLPRIVEERFPELSGRIEQVEAIARTYAAKKRAANAMDYDDLLVQWMRLMEQR
PDARDRMAREFTHLLVDEMQDTNTLQIEIVETLAAAGAGNLTAVGDDAQSIYRFRGANYD
NLLKFPERHPGCRVFRLEINYRSTPEIVAFTNDSIRHNVEGFPKTLISARPASHLKPLAA
ATSNAYEESDLICQLIQEAVEAGRRLGEIAVLYRNHHDSIVLQGDLVTRGLKYTVRSGLR
FFEQAHIKDVLAHLRVLSNPRDETAWRRLLLLLPGIGPAAASRILETILPTANPLDTLAT
AEAMASAPPRARGRFAAFVADLAQIRAADPGNRPAEAVHAVLKSGYTEILKQKYEHPEQR
LKDIEQLGVLAARYDALDRLVADLLLAGDVYGMDTLEPDEPAETLVLSTVHQAKGLEWSM
VFVMRLIEESFPNARAVIEPGGLDEERRIFYVAITRAKDELILTYPHLLSRGGRGPVVLT
KPSRFLQEIDVNLYERAIVSRDVEPF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcggatcacactcaggaaggccgcggggcggtccgattgggaagcgatgctg
gtgggtctcaacgaggtccagcggctggccgcagcggctcccgacggggtcaacctgatt
ttggctggccccggctcgggcaaaacccgggtcatcacccatcgggtcgcctggttgatt
ggtcagggagttgcccccgagtcgattctgctgaccaccttcacccgacgcgccgccagg
gaaatggtggcgcgtctgagcagtctggtcggtccggccgccgaccaggtttgggccgga
acctttcatcagatcgccaaccgcctcctgagacgccgagagttcgccgaggcgttggga
tatcagtccaacttttccatcctggacgccgaggacgcgctggacttggtggcccaggcc
atcgacgaactgggtctggggacgcgcggccgttcctctacgcgacgcggcggttcggag
tcaggttgtggcgaggcgggcggacccttgaaaccctctacggtccaggcggccttaagc
ttggctctgaacacgcggaccggcttaccgcggatcgtggaggagcggttccccgagttg
agtggccgcatcgagcaggtcgaggcgatcgcccgcacctacgccgccaaaaagcgggcg
gccaacgcgatggactacgacgatctgctggtccagtggatgaggctgatggaacaacga
cccgacgcccgcgaccgcatggcccgcgagttcacgcatctgctggtcgatgaaatgcag
gataccaacactcttcagatcgagatcgtagaaaccctagccgctgccggcgcgggcaac
ctgaccgcggtgggcgacgacgcccagtcgatctaccgcttccggggagccaactacgac
aatctgctcaagttccccgaacgtcaccccggttgccgcgtcttccggctcgaaatcaat
tatcgatccaccccggagatcgtcgccttcaccaacgattccatccggcacaatgtcgag
gggtttcccaaaacgctgatctcagcgcgtccagcgtcccacctcaaaccgctcgccgca
gccacctccaacgcctacgaggagtcggatctgatttgccaactcattcaggaggcggtc
gaagctggccgtcgccttggcgagatcgccgtactctaccgcaaccaccacgatagtatc
gtgttacagggggacctcgtcactcggggcctcaagtacaccgtgcgcagcggcctcagg
ttcttcgagcaagcgcacatcaaagacgtgctggcgcatctgcgggtcctctccaacccg
cgcgacgagacggcttggaggcgtttgctgctgctgttgccaggaatcggtccagcggcc
gcgagtcggattctcgagaccatcctgcctaccgccaatcctttggacacgctagcaact
gccgaggcgatggcctcggcaccccctcgcgcccggggacgcttcgccgcctttgtggcc
gacctggcccaaatacgagccgccgaccccggcaaccgtcccgccgaggccgtccatgcc
gtcctcaaaagtggttatacggagattctgaaacaaaagtacgaacatcccgaacaacgt
cttaaggatattgaacaattgggcgtgctggccgcccgctacgacgcgctagatcgtctg
gtggccgacctgcttttggccggcgacgtttacggcatggacaccctggagccggacgaa
ccggccgaaaccctcgtcctcagcacggtgcatcaggccaaggggttggagtggtcgatg
gtgttcgtgatgcgtttgatcgaggaatccttccccaacgcccgcgcggtgatcgaaccc
ggcgggctcgacgaagagcgtcggatcttctacgtcgccatcacccgcgccaaggacgag
ttgatcttgacctacccccacctgctctcacgcggagggcgggggccggtggttctgacc
aaacccagccggttcctccaagagattgatgttaacctgtatgagcgagccattgtttct
cgggacgttgaacccttctga
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