KEGG   Ictalurus punctatus (channel catfish): 108265870Help
Entry
108265870         CDS       T04658                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  
histone deacetylase 6 [EC:3.5.1.98]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
Enzymes [BR:ipu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108265870 (hdac6)
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108265870 (hdac6)
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     108265870 (hdac6)
Membrane trafficking [BR:ipu04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    108265870 (hdac6)
Chromosome [BR:ipu03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     108265870 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
5
AA seq 1103 aa AA seqDB search
MDPASDQTPKGLKRSPKKTPQSSGKRENSKHSNKPSLQEARNKGRRNRGKAEEEMTSKLK
IMDLHDKLKATGTGLVYSDVFARYHCLWDSSHPECPERVTAIVGMMETEGLLSRCVRVET
RAASDEELSLVHTKEYVDLMRSTQKMTEEELKCVSERYDSIYLHPNSFSCACLATGSVLQ
LVDKVMTSELRNGFAVCRPPGHHAQAELMNGYSMFNNVAVAARYARKQHGVQRVLIVDWD
VHRGQGVQYAFQEDPSVLYFSVHRYEESLFWPHLPEGDSGAVGSGPGEGYNINVPWNKTG
MEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDAVVGDPKGEMCASPQCFSVLTHMLMGL
AEGRIVLALEGGYNLQATAEAACASLRSLLGDPCPHLNSPGAPSESALKSIAKTVSALYP
FWTSLQTLEGGPLSEAEPLPSAVCVEKLESSVKVTGLVYDERMMEHHNMWDSHHVELPQR
IFRIFSHHEDLGLVDRCQRIPARLATEDELALCHGSEHIATIKSTEQMKPRDLNRLGDEY
NSIYISKESYKCALLAAGACFSVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTA
ALTARYAQSITHNTLRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYDEGTFFPYSEDA
DYDKVGRGKGTGYNVNIPWSRAKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARG
DPLGKYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLTSISTSMAMCTSMLLGDTPPLL
PPLPPPHPSASISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKTKHTPAGKGKNSPP
QVTPQQQHQRTAVTTSPASPNTDQEDSGLDELTQGLRCLDLSTSTISASSSPASVPVGGA
RPKVKPSPQRDSTEVQEVSPVPVIESGIVDGDAKAESTPSKQEEQSEPQAEESDAGAVCD
QESPALEGACGYTKKSVFELVCSAADVAGDTMYVVDPLAWCPHLESVRAVPAGGIDVFRP
CEECGAETENWICLCCYKVLCGRFVNEHMVAHGQLSSHPLVLSFADLSVWCYSCESYVHN
KVLYEAKNAAHLAKFGEEIPPIN
NT seq 3312 nt NT seq  +upstreamnt  +downstreamnt
atggatcctgcgtcagatcaaactccaaagggtttgaaacgctctccaaagaaaacgcca
cagagctctggcaagcgggaaaacagcaaacacagcaataaaccaagtctccaggaggct
agaaataaaggtagacggaaccgaggcaaagcagaagaggagatgaccagcaaactcaaa
atcatggatttgcacgacaagctgaaggcaaccggaactggcctggtttactccgacgtc
tttgcccgttatcactgcctgtgggactccagtcaccccgagtgtccggagagagtgacc
gctatagtagggatgatggagacggaggggctgctgtctcgctgcgtgcgggtggagaca
agagctgcatcagacgaggaactgtctctggttcacacgaaggaatacgttgatctcatg
aggtccactcagaagatgacggaagaggagctgaagtgtgtctctgagcgctatgactcc
atctacctccatcctaactctttctcatgtgcctgtctagccaccggctctgtcctccag
ctggtcgacaaggtgatgacatcggagcttcgcaatggcttcgccgtgtgcaggcctcca
ggacatcacgcccaggctgagctgatgaacggatactccatgtttaataacgtcgcggtg
gcggcgcgttacgctcggaaacagcacggcgtccagcgggttctgattgtggactgggac
gtgcatcgcggtcagggagtccagtacgccttccaggaggatcccagtgtcctgtatttc
tccgtacatcggtacgaggagagcttgttctggcctcacctgcccgagggagacagcggc
gctgtgggttcaggaccaggcgagggctacaacatcaacgtgccctggaacaagacaggg
atggaggacggagattacgtctcagcgttccagagaattctgctgcctgtagcctacgag
tttcagcctcaacttgtgttagtagccgctggctttgacgctgtggttggtgatccgaag
ggtgagatgtgtgcgagtccccagtgtttctctgtactgacccacatgctgatgggtctg
gccgagggccggatcgtgctcgcgttggagggaggatataacctgcaggccacagcagag
gcggcttgtgctagtttgaggtcactcttgggtgacccctgccctcatctgaactcgcca
ggagctccgagtgagagtgctctaaagtccatcgctaagacagtttctgctctgtatccg
ttttggaccagcctgcagactctggagggaggccctctatccgaggcagagcccttaccc
tcagccgtatgtgtggagaaattggaatcttccgtgaaagttaccggactcgtttatgac
gagcgtatgatggagcatcacaacatgtgggacagccatcacgttgagctccctcagaga
atcttccggatcttctcccaccatgaggatttgggactcgtggaccgttgccagcggata
ccggctcgtttagccacagaggacgagctcgcactttgtcacggatcagagcacatcgct
acgataaagagcaccgagcagatgaagcccagagacctgaacaggctcggagacgaatat
aattccatctacatcagtaaagagagctataagtgtgcactcctggcagctggagcatgt
ttcagtgtagctcagtccatcctcactggtcaggtgaggaacggtgtggctatcgtacgc
ccccctgggcatcacgcagagagagacaccgcctgcggattctgcttcttcaacacggct
gccctgaccgcccgctatgctcagagcattacccacaacaccctgcgcgtcctcatcctc
gactgggacgtgcaccatggcaacggcacacaacacatttttgaggatgatgacagtgtg
ctctacatctctctccatcgctacgatgaaggcacattcttcccctactcggaagacgcc
gattacgataaagtgggccgagggaaaggcacgggatacaacgtcaacattccctggagc
agagccaagatgggcgacccggaatatctagcagccttccaccatgtggtgatgccgata
gcacgagagtttgctccggagctggtgctggtgtcggccgggtttgacgccgctcggggt
gatccgttaggcaagtaccaggtgaccccggagtgctacgcccacctcacacatcagctg
ctgagtctagcagcaggacgagtgcttgtcattttagagggaggttataacctcacgtcc
atctccacatccatggccatgtgcaccagcatgctcctgggtgacacgcccccgctgctg
cctcccctgccccctccacaccccagcgcttccattagcatcaacaacgtcctgcgagca
cacgccccctactggagatctctcagaatacagattccagagtctctgcgtttgtccttg
ccttctcctaaacccaagaccaagcacacaccagcaggaaaaggcaaaaattctcctcct
caggtcacccctcagcagcagcaccaacgcaccgctgtgacgacttcaccagcatcgcca
aatactgatcaggaggactcggggctagacgagctcactcaaggcctgcgctgtctggac
ctcagcacatctaccatatctgccagttccagccccgcctctgtccctgtgggcggggct
agacctaaagtgaagcccagcccacagagggactccacagaagtgcaggaggtgtcgcct
gtccccgtgatagaaagcggtatagtagacggtgatgcaaaagccgagtccacgcccagc
aaacaggaggaacagtcagaaccacaggcggaagaatcggacgccggggcagtgtgtgat
caggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccgtcttcgagctc
gtgtgcagcgccgcggacgtggccggggatacgatgtacgtagtggaccctttggcgtgg
tgcccacacttggagtcagtgcgtgcggtgccagcagggggcatcgacgtgttccggccg
tgcgaggagtgcggcgccgagacggagaactggatctgcctctgctgctataaggtgttg
tgtgggcgttttgtgaacgagcacatggtggcccacggtcagctgtcctctcaccctctg
gtcctgagctttgctgatctatcagtgtggtgctactcctgcgagtcctacgtgcacaac
aaggtgctgtatgaagcaaagaatgctgctcatctcgctaagtttggggaggagattccc
cccatcaactaa

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