Dokdonia sp. 4H-3-7-5: Krodi_0116
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Entry
Krodi_0116 CDS
T01484
Name
(GenBank) Pyridoxal-5'-phosphate-dependent protein beta subunit
KO
K01697
cystathionine beta-synthase [EC:
4.2.1.22
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi00260
Glycine, serine and threonine metabolism
kdi00270
Cysteine and methionine metabolism
kdi01100
Metabolic pathways
kdi01110
Biosynthesis of secondary metabolites
kdi01230
Biosynthesis of amino acids
Module
kdi_M00338
Cysteine biosynthesis, homocysteine + serine => cysteine
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Krodi_0116
00270 Cysteine and methionine metabolism
Krodi_0116
Enzymes [BR:
kdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.22 cystathionine beta-synthase
Krodi_0116
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PALP
CBS
GDP_Man_Dehyd
Motif
Other DBs
NCBI-ProteinID:
AEE18106
UniProt:
F4AXI9
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All DBs
Position
complement(135416..136780)
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AA seq
454 aa
AA seq
DB search
MKYAENILGTIGDTPMVKMNALVKDLPCLVLAKYETFNPGNSVKDRMALQMVEDAEAAGI
LKPGGTIIEGTSGNTGMGLALAAIIKGYKMICVISDKQSKEKMDILRAVGSEVVVCPTNV
EPDDPRSYYSTSKRLAEETPNSWYVNQYDNPSNCKAHFNSTGPEIWDQTDGKVTHFVVGV
GTGGTISGVGSYLKMKNPNVKVWGIDTYGSVFKKYKETGIFDENEIYPYITEGIGEDILP
LNVNFSIIDGFTKVTDKDAAVYTRRLAKEEGMFLGNSAGSAIKGLLQLNEEGKFGPDDVV
VVLFHDHGSRYVGKMFNDDWMRERGFLDQEYKVASDLIQNHIDKPLVTVKTEELVSHAIE
RMRDYKISQIPVEDVTGIVGSVDEGDLFRAYMENNEVADLPIKDVMGAAYPIVQKNATVA
EVSKLISKENNAVLVDLGDGKHHIITKHDIINAM
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgctgaaaatatattaggaacgataggagacactcctatggtaaaaatgaac
gcacttgtaaaagaccttccttgtcttgtgctagcaaaatatgaaacttttaatcctgga
aattctgtaaaagaccgtatggcattacagatggtagaagatgcagaggctgccgggatt
cttaaacctggagggactattatagaaggtacttctggtaatacgggaatggggcttgcc
cttgctgctattattaaaggatataaaatgatctgtgtaatctcagacaagcagtctaaa
gagaagatggatatcttgcgtgctgtaggtagtgaggtggtagtgtgtcctacaaatgta
gagccagatgatccaagatcttactactctacatcaaaaagacttgccgaagaaacacca
aatagctggtacgtaaaccagtatgataatccttctaactgtaaggcacactttaatagt
acaggaccagaaatctgggatcaaacagatggaaaggtaacgcactttgtggtaggtgta
ggaacaggaggtaccatctctggggtaggaagctatcttaaaatgaaaaacccaaatgta
aaagtatggggaattgatacgtacggttctgtatttaaaaaatataaggagacagggatt
tttgacgagaatgagatttacccatacatcacagagggaataggggaagatatattacca
cttaatgtaaactttagcatcatcgatggttttacaaaggtgacagataaggatgctgcg
gtatacacaagacgccttgctaaagaggaaggaatgttcttggggaattctgctggatct
gcaattaaggggttgttacaacttaatgaggaaggaaaatttggtccagatgatgttgtt
gttgtattgtttcacgatcacggaagccgttacgtaggtaaaatgtttaatgacgactgg
atgcgtgagcgcggcttcttagaccaagaatataaagtagcaagcgatttaatccagaat
catatagataaaccactcgttactgtaaagacagaggagcttgtgtcacacgctatagag
cgcatgcgtgattataaaatctcacaaatccctgtagaagatgtgacaggtattgtaggt
tctgtagatgagggtgacctctttagagcatatatggagaacaacgaggtggcagattta
cctataaaggatgtaatgggagcagcgtatcctattgtacagaaaaatgctactgtagca
gaggtttcaaagcttatctcaaaagagaataatgcagtcttagtagatctgggtgatggt
aaacatcatatcattacaaagcatgatattattaatgctatgtaa
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