Klebsiella michiganensis E718: A225_0449
Help
Entry
A225_0449 CDS
T02173
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
koe
Klebsiella michiganensis E718
Pathway
koe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A225_0449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koe03019
]
A225_0449
03016 Transfer RNA biogenesis [BR:
koe03016
]
A225_0449
Enzymes [BR:
koe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A225_0449
Messenger RNA biogenesis [BR:
koe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A225_0449
Transfer RNA biogenesis [BR:
koe03016
]
Prokaryotic type
tRNA degradation factors
A225_0449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
AlkZ-like
OB_Dis3
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AFN30341
LinkDB
All DBs
Position
466483..468933
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKQGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGGAGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKA
AQPKGEKKAKKPSEKIQKIAAATKAKRAAKKKNIAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaatagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagactgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaagggaccgttatcggtcatcgcgatggttatggcttcctgcgc
gttgaaggccgtaaagatgacctgtatctgtcgtccgagcagatgaaaacctgtattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgcgaagcgcgt
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgcg
ggcgttggcttcgtggtgccggatgacagccgcctgagcttcgatatcctgatccccccg
gaacagatcatgggcgcgcggatggggtttgtggtggtggttgagctgacccagcgccca
acccgccgcaccaaagcggtcggcaagatcgttgaggtcctcggcgacaatatgggtacc
ggcatggcggtcgatatggccctgcgcacccatgaaattccctacgtctggccgccagcg
gtcgaaaaacaggtggccggcctgaaagaacaggtaccggaagaggcgaaacaagggcgc
gttgatttacgtagcctgccgctggtcaccattgatggcgaagacgcccgtgactttgat
gatgccgtgtactgcgagaagaaacgcggcggtggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgcccgggtacgccgctggatggcgaagcgcgcagccgcggt
acgtcggtctacttcccgtctcaggtggttccgatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatcctcaggtcgacaggctctgtatggtttgtgaaatgacgatttcg
gccaaggggcgcctgaccggcttcaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctctacaaagtgctggacggcgcg
cgtgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatctttaatgct
gaacgccgtattgaacgtattgagcagacccagcgtaacgacgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgctgcgcgcttcgttgagaaggccgaggaaccg
gcgctgttccgtatccatgacaaaccgagtacggaagcgattaccgcattccgttcggtg
ctcgcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacctctatcgccgatcgtccggatgcagagatgctgcaaactatgctgctg
cggtcgatgaaacaggcgatatacgatccggaaaaccgcggtcactttggtctggcgctg
caatcctatgcccatttcacctcgccgattcgccgctatcctgacctttcgctgcatcgc
gcgatcaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggacgagatgctgcagctgggggcgcactgttcgatgaccgag
cgtcgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgctg
gatcaggtgggtaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gtccgtctggatgagctgtttattgatggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtcgggcagcgtctgattggtgaatccggcggccagacctat
cgactgggcgatcgcgtggaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gacttctcgcttatctccagcgagcgcgcgccgcgcaacgtcggtaagaccgagcgtgaa
aaagcgaagaaaggcggcgcaggtaaatcttccggacgtcgccgtcaggcgggcaagcag
gtaaacttcgagccggatagcgcattccgcaaacagaaaggtcagtctcagccgaaagcc
gctcagccaaaaggcgagaagaaagcgaaaaagccgtcggagaaaatccagaagatagcc
gcagcgaccaaagccaagcgcgcggcgaagaaaaagaatatcgctgagtag
DBGET
integrated database retrieval system
