Lactobacillus amylovorus 30SC: LAC30SC_01280
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Entry
LAC30SC_01280 CDS
T01436
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAC30SC_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lai03400
]
LAC30SC_01280
Enzymes [BR:
lai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAC30SC_01280
DNA repair and recombination proteins [BR:
lai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAC30SC_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
DUF1474
RecG_dom3_C
UB2H
BBMV_Gp1_N
DprA_WH
AAA_22
Y_Y_Y
DUF3906
Motif
Other DBs
NCBI-ProteinID:
ADZ06448
UniProt:
F0TIE1
LinkDB
All DBs
Position
267374..270868
Genome browser
AA seq
1164 aa
AA seq
DB search
MRLTEILKQDQDLNNFIAKTKQVKNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESK
AQNLYGELNSILEDDAAHYFPVDATIATQTAVSSPDELSSRIQSLNFLLSGKPGIVVTTP
QGLQYKLSSPADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILD
IYPLDRENPVRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEK
IKKDMVDAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLIEKPSSLLEYLPKNGEIL
LDDLPLIKQAVEDVDKQNAAFISDELKTGAMLSHQELRSDFDDVLSKDKHHRIYFSLFQR
SMGRLRLGQMLNWQTREPEQFFSQMPLIKSELESYQKSGQTVVLQADNDKRARQIDQTMV
DFGLNLPIVGEDELVEGRAQIMVGGYASGFSLPTVKLVYLTERELFNKRPQRKKRIKTLE
NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGDQLFVPADQL
SLVQKYVGSEGKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPD
DDLQRQFDDAFPYPETPDQLRSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAI
QDNKQVAFLVPTTILAQQHYETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDL
VVGTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGGQVFYLHNRISDIDETV
EKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIE
DADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIKERKGKKTVKKSNAEIDLKLEAY
IPDSYIGDQEEKIEFYKKIKAVADQDELDKIEDELIDRFGDYPVAVENLLAVAGLKAAAD
LAQVLTVLKTGDKIKVEFNNAASRELEGPNIFKALEHVNMKARISMNQEKRMVVLLQMPD
EMKNRVLFNELATFLQAASDIVQR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaacagaaatacttaaacaagatcaagatttaaataattttattgcaaaaaca
aaacaagtaaaaaactcactaatcactggcgctaatgccggtgcttttagtctactctta
aagcaaattgtttctgagccaaatgcgcctttaattttaattgaagaaaatgaaagcaag
gcccagaacctatatggtgaattaaactcaattttggaagacgatgctgcccattatttt
ccagtcgatgcaaccattgctacgcaaactgcggttagttcaccagacgaattaagcagc
cgaatccaatctttgaattttttattgagcggtaaaccaggcattgtggtaaccacacca
cagggattgcagtataaattgtcgtcgccggcagattttgccaaggcacggcgagaattt
gcaccagaaaaagaatatgaattaaccgaactgaataattggttagttggtgctggctat
aaaaaagaggcattggtagcccgtcctggtgaatttgccattcgtggtgatatcttggat
atttatccactagatcgtgaaaatccggtcagaatcgaattctttggcgatgaaattgat
actatcaaggaatttgacttggcaagtcaacggagtcaaaaagaaattgagcaggtaacg
gtggctgctgcgcaagaccgcgtttttgccaaggatgcaatttttaatgcagcggaaaaa
attaaaaaggatatggtcgatgcacctgcaccagctaaggctgtaaaagatcactttgca
gtagcgctcgataatcttgaagatggcgggttgccggataattacgcctttttggtcgac
tacttaattgaaaagccaagcagcttattagaatatttgcctaaaaatggtgaaatttta
ttggatgatttgccattgattaagcaagcagttgaagacgtggataagcaaaatgcggca
tttattagtgatgaactaaaaactggcgcaatgttgtcacatcaagaattgcggtctgat
tttgatgatgttttaagtaaagataagcatcatcggatttacttctcacttttccaaaga
agcatgggacgcttgcgtttaggacagatgctcaactggcaaacgcgtgagccggaacaa
ttctttagtcaaatgccgttgattaaatcagaacttgaatcctaccaaaagtctggtcaa
acggttgtcttgcaagccgacaatgataaaagagctagacagattgatcaaacaatggtt
gattttggccttaatttgccaattgtcggtgaagacgaattagttgaaggcagagctcaa
atcatggttggtggctatgccagcggcttttctttaccaacggttaaattagtttattta
actgaacgagaactatttaataagcgtccgcaacgtaaaaaacgaattaagaccttggaa
aacgcgcaaagattgcgtaattataccgaacttaaacctggcgactacgttgttcacgtc
aatcacggtattggccgttttgaaggaattaagactctcgaaaataatggcgtaaaacga
gactacatcaccattacttaccagcatggcgaccagcttttcgtgccagcggatcaattg
agcttggttcaaaaatacgttggttcagagggcaagacgccacatattaacaaactaggt
ggtagcgaatgggctaaaaccaagcggaaagttcaatctaaggttgaagatattgccgat
gatttgatcgaactttatgctaaacgtgaatctgaaaaaggttttgccttttcaccagat
gatgacttgcagcgccaattcgatgatgcctttccataccctgaaacgcctgaccagttg
cgttcaattaaggaaattaaagaagatatggaaaagccgaagccaatggatcgtttgcta
gttggggacgttggttttggtaaaactgaagttgctttgcgggctgcttttaaggcaatt
caagataataagcaggttgcctttttggtacctacgactattttggctcagcagcactat
gagacaattcaggatcggtttaaggatttcccagtaaacacggcgatgttgtcacgtttt
caaactccggctgaatcaaaagagatcatcgaaggacttgaagatggcaaaatcgactta
gttgtgggaactcaccggcttttgtctaaagatgtgcatttcaaggacttgggtctgtta
attgttgatgaagagcagcgctttggtgttaaacacaaggaaaagttaaagcagttaaag
gcaaatattgatgttttgacgctgacggctacgccaattccacgtacgttgcacatgtca
atggttggggtacgtgatttatcagttatggaaactccaccacaaaatagatatccaatt
caaacttacgtcatggaacaaattcctagcgtaatcaaggatgcctgtctaagagaaatg
aagcgtggcggtcaagtcttttatttacacaaccgaattagcgacatcgacgaaacggtt
gaaaagttgcagcagttgattccaaatgcccggatcgctagtgcacacggcagaatgagt
cagaaccagctggaagatattctgtatcgttttttgaatcgtgaatttgatattttggta
acgaccacgatcattgaaactggtattgatatgcctaacgttaatactatgatcattgaa
gatgccgatcactatggcttgagtcagctgtatcaattgcgtggtcgaattggtagaagt
gccagattggcttatgcctatttcctttaccaaccaaataaggttttgactgaagttggt
gaaaagcggctagatgcgattcgcgactttactgaacttgggtcaggtttcaagattgcc
atgcgtgatttatcaatcagaggtgccggcaacatgctaggtgcccagcagcacggcttt
atcgatagtgttggctatgacttgtactcacaaatgttgagtgatgctattaaagaacgt
aagggcaaaaagaccgttaagaagtcgaatgctgaaatcgatcttaagcttgaagcatat
attcctgattcatatattggcgatcaggaagaaaagatcgaattctataagaagattaaa
gctgttgccgatcaagatgagttggataaaattgaagacgaattaattgatcgtttcggt
gattatcctgtagcagtagagaacttgttggcggttgctggtttaaaggctgctgcagat
ttggcgcaagtgctgactgtccttaaaactggcgataaaattaaagttgaattcaataat
gcggcttcacgtgaattagaaggacctaatatcttcaaggcacttgaacacgtgaatatg
aaagcccgtattagcatgaatcaagaaaaacgaatggtagtattgctgcaaatgcctgat
gaaatgaagaatcgtgttttattcaatgaattagccacattcttgcaggcagcaagcgat
attgtacaaagataa
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integrated database retrieval system
