Candidatus Liberibacter africanus: G293_05300
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Entry
G293_05300 CDS
T03953
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lau
Candidatus Liberibacter africanus
Pathway
lau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G293_05300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lau03400
]
G293_05300
Enzymes [BR:
lau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G293_05300
DNA repair and recombination proteins [BR:
lau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G293_05300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKK20669
UniProt:
A0A0G3I450
LinkDB
All DBs
Position
complement(1173923..1177486)
Genome browser
AA seq
1187 aa
AA seq
DB search
MIFGFDIERISEKSCKKDIICPIISGTEGFVLAKIAHFGRSILYICSDERYLINLKKTLT
FIVPEIKVIIFPAWDCLPYDRVSPSPHVVAQRLLCVSYLNSCHSSKKTTIILTTVSALMC
RSVPLKSTTDCKLSIRSKDHINMAKVIKKLETNGFERVNTVYKVGEYAVRGGILDVYAPT
ERYPVRVDFFGDTIESLRLFDSSTQRTIREISIFTINTLSEVILTPENIGRFRENYLANF
GAATQEDPLYNAISQGRRYPGMEHWLPFFYQNIETIFPYLSEFCIVTDHLVKETALKRSQ
LIQDYYNARLQYSSDKKQDYFYRPILPEKLYLDYQQFDALTRTTHKLVQMSSFNQPETAD
NRVVHLNIFPGKSWIPSSMKIIESRDNWESSDRFDEFLKYVSEKAQAGIKTLLSVYSKGG
LQHLIHLMENRGFHKIKKIDSFAEMASLTKEEIAATVLPIKQGFETDNMMLVTEIDFLGK
KIVDRVIRTKKSHVQALFESSNIEEGTIIVHAEHGIGRFVRLYSIEVSGSLHDCLELHYA
DNAKLFVPVENIDLISRYSSTETTAIILDKLGGLSWKTRKSNLKKRLENLAQKLVDIAAK
RAVHHVPPMTVSQDLYSQFIKRFPYIETEDQEQAIDAVTQDLSSGLIMDRLICGDVGFGK
TEVALRAAFIAVMNGFQVAVIAPTTILVQQHFRLFSERFQDFSVRIVSISRFVQAKEVSL
NKKAIAEGQVDIVVGTHALLHPKIIFANLGLIIVDEEQHFGVKHKEALKETHTGVHVLTL
SATPIPRTLQLAITGVRELSLINMPPINRIACRTSVSIFDPLLIRETLMREHYRGGQSFY
VCPRLSDLDKCYEFLQAEVPELKVAMAHGKMSPRNLEDRMNSFYEEKYDILLSTSIVESG
LDLPKANTIIVHRADMFGLAQLYQLRGRVGRSKIASFALFLLPENCPITASAQKRLSFLQ
SLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIKEMGFELYQKVLEETIASIKGKKELVE
SDWSPRVFIEASVMIPESYVSDINLRLSLYRRLGNITDRADIGHFKEEMIDRFGPLPIEV
IYLLKVIFLKLLCRTANIDKMDIGAKGIIIHFRNKTFHDPEGLLQYIEQQKGKVIIRPDQ
SIVFDCLLPTINQRFVEAKRIIAELIKMIDVDTKQCYSSDSQQLDVG
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgatttttggatttgatattgaaagaattagtgaaaaatcctgtaaaaaagatataata
tgtccaataatcagtggtactgaaggatttgttctggcaaaaatagcacattttggtcga
tctattctttatatttgctccgatgaacggtatttaattaatctaaaaaagactcttaca
tttattgttcctgagattaaagttatcattttcccagcttgggattgtcttccatatgac
cgcgtatctccttctcctcatgtggtagcacagcgtcttttatgtgtttcttatcttaat
tcttgtcattcatctaagaaaacaaccattatactcacaactgttagcgctttgatgtgc
cgttctgtccctcttaagtcaaccacagattgtaagttgtcgatacgatctaaagatcat
atcaatatggcaaaagtcataaaaaaattagaaacaaacggatttgaaagagttaatacg
gtatataaagtaggtgaatatgctgtgcgaggaggtattcttgatgtttatgctcctacg
gagagatatcctgtacgagtagattttttcggagatactattgaaagtcttcgtctattt
gattctagtacgcaacgtacgattagagaaatttccatttttacaatcaatactttaagc
gaagttattttaacacctgaaaatatcggtcgttttcgtgaaaattatcttgcgaatttt
ggtgcagcaactcaagaagatcctttatataatgctatttcgcagggacgacgatatcct
ggtatggagcattggttgccttttttctatcaaaacatagaaactatttttccatattta
agtgaattctgtatagtcaccgatcatttagttaaggagacagcactcaaacgttctcaa
ttaattcaagattattataatgcgagattgcagtattcttcggataaaaaacaagattat
ttctatagacctattttgccagaaaaactttatctagattatcaacagtttgatgcatta
actcgaactactcataaattagttcaaatgtcatcttttaatcagccagaaacagctgac
aatcgtgttgttcatttgaatatatttccaggaaaatcgtggattccgtcttcgatgaaa
ataattgaatcgcgagataactgggaatcaagtgatagatttgatgaatttttaaaatat
gtttctgagaaagctcaagcaggaataaaaacacttctatcagtctattcaaagggggga
ttacaacatttaattcaccttatggagaaccgtggatttcataaaatcaaaaagattgat
tctttcgcagaaatggcttctctcacaaaagaagaaattgcagctacagttttgccgatc
aaacaaggatttgaaacggataatatgatgcttgtgaccgaaatagattttctcggcaag
aaaatagtagatcgtgttattcgcacaaaaaaatctcatgtacaggctttgtttgagtct
tctaatatcgaggaaggaactattattgttcatgcagaacatggaatcggacgctttgtg
cgtttatacagcattgaagtatccggatcattgcatgattgtcttgaattgcattatgct
gataatgctaaattatttgtgccggtagagaatattgatttgatctctcgatatagtagt
acagaaactactgcgataatacttgataagttaggaggattgtcgtggaagacacgtaag
tccaacttaaaaaaacgtcttgaaaacttagcacaaaaacttgttgatatcgcagctaaa
agagctgtccaccatgttcctccaatgacggtctcgcaagatttatatagtcagtttata
aaaagatttccttatattgaaacagaggatcaagaacaagccattgatgccgtaacacaa
gatctttccagtggtttgattatggatcgattaatttgcggtgatgtaggatttggaaaa
acagaagttgcattgcgagctgcattcattgctgtcatgaatggatttcaagtggcagtt
attgctcctacaactattttggttcaacagcactttcgattattctctgagcgttttcag
gatttttcagttcgtatagtaagtatttcgcgttttgttcaagcaaaagaggtttctctc
aataaaaaagctattgcagaaggtcaagtagatatagttgttggcacgcatgctttattg
catcccaaaataatctttgccaatcttggattaattattgttgatgaagaacagcatttt
ggtgtcaaacataaggaggcattaaaagaaacgcatacaggagtacatgttttaactctt
tcagcaacacctattccgcgtactttgcaattagcgataacaggtgttcgagaattatca
ttgattaacatgccaccgattaatcgtattgcttgtagaacttctgtttcaatttttgat
cctttattaattcgtgaaaccttaatgcgtgaacattatcggggtggtcagagtttttat
gtgtgtcctcgtctctcagatttagataaatgttatgagtttttacaagcagaagttcca
gaactcaaagtcgcaatggcacatggaaaaatgtctcctagaaaccttgaagatagaatg
aattctttttatgaagagaaatatgatatattgctttctacttctattgtagaatctgga
ttagatttgccaaaagccaatacaataattgtacaccgtgctgatatgtttggtttagct
caattatatcaattacgtgggagagtagggcgatcaaaaattgcatcatttgccttattt
ttattgcctgaaaattgtcctatcactgcttctgcacaaaaacgcctgagttttttacag
tctttgaatactttgggtgcaggattccagttagcgagttatgatcttgatattcgtggg
acaggaaatctattgggagaagagcaatccggtcatattaaggaaatgggtttcgagtta
tatcaaaaggtgttggaagaaactattgcatccattaaagggaaaaaagaattagtcgag
agtgattggtctccgcgggtatttatagaggcatctgttatgataccagaaagttatgtc
tctgatattaacttacgcctttctttatatcgtcgtcttggtaatattacagatcgcgct
gatattggtcattttaaagaagaaatgatagatcgatttggtccattgccgattgaggtt
atatatctgttaaaagtaatatttctcaaattgctttgtcgaactgcgaacatagataag
atggatataggggccaaaggtattattatacacttccgcaataaaacatttcatgatcca
gaaggtttactgcagtatattgaacagcaaaaaggaaaagtcatcattcgtcctgatcaa
agtattgttttcgattgcttgttaccaacgatcaatcaacgattcgtcgaagcaaaacgc
attattgctgagttgatcaaaatgatagatgttgatacaaagcaatgttacagtagtgat
tcacaacaattagacgttggataa
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