KEGG   Lates calcarifer (barramundi perch): 108884325Help
Entry
108884325         CDS       T04895                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03410  Base excision repair
lcf03420  Nucleotide excision repair
lcf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    108884325 (lig1)
   03410 Base excision repair
    108884325 (lig1)
   03420 Nucleotide excision repair
    108884325 (lig1)
   03430 Mismatch repair
    108884325 (lig1)
Enzymes [BR:lcf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108884325 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     108884325 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108884325 (lig1)
DNA replication proteins [BR:lcf03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108884325 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108884325 (lig1)
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108884325 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     108884325 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     108884325 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 108884325
NCBI-ProteinID: XP_018533688
LinkDB All DBs
Position
Unknown
AA seq 1015 aa AA seqDB search
MQRSIASFFQPKSKDKDIQKKATDEPVKKPVKSPLKVQNGVQEADSPIKKVTKRSRQILD
SDDDEAPVVKEQVAAKGQGDKEAPSKTEKKDDVFKAVPTPLSPPPAPTTPVTPATPATPA
TPASSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDETRSGSESQKDEAEAKEEQGQQ
NKRPRVETSASSAGNTGEPMEEGAKEEEVEKAVTEANSPDEEEENEKKEEGEEAKEEERE
ERKSSDEREKKAEGAEKKNEAKEKMDDEKGPAVAKKEVVEKDTREGEESPKSQTVKKQKE
AKEQKDKEPAKKAPISSFFAPRKAAVKTEKPEKNDEEKKTSTERKSSAEESKDTKGDSTS
GQTDYDPSRPGYHPIDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLL
LSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGL
VAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARY
IVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSL
ILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEA
AFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSE
AVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRAL
LRESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHN
WLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFK
DEDLEQHYKFLKDHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGM
VDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq 3048 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagagcaaagacaaggacattcagaag
aaagccacagatgaaccagtgaaaaaacctgtcaagagccctctcaaggtgcagaacggt
gtccaggaagccgactcgcccatcaagaaggttaccaagcgcagccgtcagatcctggac
agcgacgatgacgaggcaccggttgttaaagagcaagtcgccgccaaggggcaaggagac
aaagaagctcccagtaaaacagaaaagaaggatgatgtgtttaaggcagttcccaccccc
ctgtctccaccaccagccccaaccacccccgtaacaccagccactccagccactccagcc
actccggcctcttcagcttcaccggggacccccagcactcctaactccatctccccgtct
gggattgttaaacgcaagaccgcgaggaagatgttccccaagaggaagctcgatgagacc
aggagcggcagcgagagtcagaaggacgaggccgaggccaaggaggagcagggtcagcaa
aataaacgaccccgtgtggagaccagtgccagcagtgcagggaacaccggtgaacccatg
gaggagggagcaaaggaagaagaagttgaaaaggcagtgacggaggctaacagcccagat
gaggaggaggagaacgagaagaaagaggaaggagaggaggccaaggaggaggagcgggag
gagagaaagagctctgatgagagagaaaagaaagctgagggggcggaaaagaaaaatgaa
gcaaaggagaagatggatgatgagaaagggcccgccgttgccaagaaggaggtggttgaa
aaggacacgcgagagggagaagagagcccaaaaagtcaaacagtgaaaaagcagaaagaa
gcaaaagagcagaaagataaggagccggccaagaaagcccccatcagcagtttctttgct
cctagaaaagctgcagtgaagacagagaaaccagagaagaatgacgaagagaaaaagacg
agtacagagaggaagagttcagcggaggagagcaaagacacaaaaggtgactcaacttca
ggacagacagactatgatccgtccagaccaggctatcatcccatagaccacgcctgttgg
aagcagggtcagaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagag
gactctggcaggctgagaaacatcgagacgctgtcgaacctgcttcgctccgtgctgctg
ctctctccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcc
tacctggggatggagcttggcgttggagagacggtgctgatgaaagctgttgctcaagca
accgggcgacaattggacaaaatcaaagcagaggcgcaggagaaaggagatttgggccta
gtggccgagagttcccgtagcaaccagcgcatgatgttccaaccggccagtctgacagca
gggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatgaat
aagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcccgctat
atagtcaggtccctcgctgggaagctgaggataggcctggctgagcagagtgtcctatca
gcactcagccaggctgtgtgcttgaccccacctggacaaggttttcctcccgctgtgatc
gacgcagggaaggggatgagcgctgagagcaggcgggcctggatcgaagagaaaagtctc
attctcaaacagacttactgtgagatgcccaattacgacgtcctcatccctgttctgcta
aaagaaggcatagaccagctacccaatcactgcaagctcactccaggtgtaccgctgaga
cccatgttggcccaccccacgaagggcgtcggcgaggtgatgaagaagtttgacgaggca
gcgttcacctgcgagtacaagtacgacggcgagcgtgcgcagattcacatcctggagagc
ggtgaggttcgaatattcagccgtaaccaggaggacaacaccagcaaataccccgatatc
atctcccgcattcccaaggtgaagaaggactctgtggtatcctgcgtcctggactcagag
gctgttgcctgggatcgtgagaagaaacagatccagcccttccaggtcctcaccacccgt
aagagaaaggacgtggatgcctcggagatcaaagtgcaagtgtgtgtgtacgcctttgac
ctcctctatctcaacggcgagtccctggtgcgacagccgttgtgtcggcgtagggctctg
ctgagagaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatcgactcc
gacaacaccgacaccatcgccgagttcctggagcagtctgtccgagattcctgtgagggc
ctgatggtgaagacgctggagaaggatgccacctatgaaattgccaagcgctctcataac
tggctcaagctgaagaaggactacctggagggggtgggtgacacggtggacctgtgtgtg
atcggcgcctacctggggaaaggcaagaggacgggcacctacgggggcttcctgctggcg
tgctacgatgacgagaacgaagagttccagtctgtctgcaagatcgggacaggcttcaag
gatgaagatctggagcagcattacaagttcttaaaggatcacattctgcccaagccccgt
gcctactaccgcttcgaccaatcagcagagcccgacgtgtggctcgacgccgtacaggtt
tgggaggtgaagtgcgccgacctgtcgctgtcgccggtctacaaggctgcaatgggaatg
gtggatccagagaagggcatttctctgaggttcccgcgcttccttcggatcagagacgac
aaaaaaccagaggacgccacgactggagctcagattgctgatttgtacaagaagcagcag
cagattcagaatcagggggagaaagctgacccagaggactactactga

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