Lates calcarifer (barramundi perch): 108891996
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Entry
108891996 CDS
T04895
Name
(RefSeq) ataxin-1
KO
K23616
ataxin 1/1L
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108891996
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Gene cluster
GFIT
Motif
Pfam:
ATXN-1_C
AXH
Motif
Other DBs
NCBI-GeneID:
108891996
NCBI-ProteinID:
XP_018544917
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Position
LG15:complement(21396184..21412006)
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AA seq
833 aa
AA seq
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MKSNQERSNGCLPPKKREILALEQRPVVVATATPPAAVVTDSPHTENLAWLASVASERCK
SRDAESPRCPMSSTSSSSPSTSVPSSTTPLSAVPLASLPAVYPTALPQQAGTIQFAQLGP
NVQFISSGPYAGYISSHIISTNASSVPNSSAIVGQRPQVESYTTALISPNTKGEQQFQIG
LSPTEMAPVSLPSSPQVTSQYIHLDSRTPLTVSGNAVTSPTAHLQLHPHAAVLPQTLTLA
PSQLVVQYADGSAGKKPEGHAKGVLNGELEVVKQAKAPSLPANHQQVQSYEARHILLPAD
YGQNPAGLQTSLVLVAQPNHGVEHEAGSNKISLVQTEKGGICLGKPVSRSSSFTSLSSSE
VVKSVTPHTVIQTTLPPEELPASLYSSTQPPIIGYITSANQHAVSYHAALPQHLVIPSGQ
SLLIPVSGANNGTEIEVSRTVSALTATTTPQISTAMPHAYLATALSKCEALGPDGNQPPP
AVAQAPVLPVLPSNPAPAVVAAPSPTPAPVPTPAPVSIQASPSISSSSSPVALPPFFMRG
SIIQLADGELKRVEDLKTEDFIQSAEISSELKIDSSTVERIDSGQTPNAVVIQFSVGELK
AQVCVEVLVEYPFFVFGQGWSSCCPDRTTQLFELSCAKLCVGDVCVSLTLRGLRNGSVTD
SQALGTKLKTSHLSDSCHNVDATVRNSMSPNAAGSNSGLLMKASSTDRLEREQVTGPGPG
LELPPGLGVVPGPVEGIYGSGQMLTALGTGEVRQESVKTDMPALTKIQCGDPERPTVRKR
RWSAPERDQTERAEEEPPLTLPKPSFVPQEVKISIEGHSSTGSERCLNKRVDC
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctaaccaggagcggagtaatggatgcctgcctcctaagaagcgtgaaattctg
gctctggagcagaggcccgtggtagtagccacagcgacgcccccagccgcagtggtgacc
gacagtccccacacggagaacttggcgtggctggcaagtgtagccagtgaacgctgcaaa
tctagggatgcagagagcccaagatgtcccatgtcctccacttcctcctcttctccttcc
acttctgtcccttcctcgaccacacctttgtctgcagtgcccctggcctctctgcctgca
gtttaccccaccgccctgccccaacaggccgggactatccagtttgcgcagctgggaccc
aacgttcagttcatcagctcagggccctatgctggctacatctcctctcacatcatctcg
acaaatgctagctctgtgcctaacagctctgccatagtgggacagcgtccgcaggttgaa
agttacaccactgccctcatctctcccaacaccaaaggagagcagcagtttcaaataggc
ctctcccccacagaaatggcgcctgtgtcgctaccaagctctccccaggtcaccagccag
tacatccatctggacagcagaacacctctgactgtcagcggaaacgctgtcacgtcaccc
acagcccaccttcagctccaccctcacgcagccgtcctccctcagacacttaccctcgct
ccctcccagctggtggttcagtatgcagatggttcagctggaaagaaaccagagggacat
gctaagggtgtactgaatggggaattggaagtggtcaaacaggcaaaagcccccagtctg
ccagcgaaccatcagcaggttcagagctatgaagccagacacatccttctgcctgcagac
tatggccaaaaccccgcaggactccagacctccttggtgctggtggcccagcccaaccat
ggagttgaacatgaagctggctcaaataagatttccttagtccagactgaaaagggaggc
atctgcttggggaaaccagtgtccagatcttcctctttcacctccctctcttcctcagag
gtggtgaagtctgtcactcctcatacagtcatccagaccactctacccccggaggagctg
ccagccagtctctattcctccacacagccacctatcattggctatatcaccagtgctaat
cagcacgctgtcagctaccatgcagcactgccccagcaccttgtcatcccaagcggccag
tccctcctcatcccagtcagtggtgccaataacggcacagaaatcgaggtcagtcgtact
gtcagcgccctgactgctaccaccacccctcaaatatccactgccatgccgcacgcctat
ctggccacagccctgtccaagtgtgaggcgcttgggccagatggaaatcaaccacccccc
gctgtcgcacaggctccagtgctgccggtcctgccctcaaacccggcccctgcagtggtg
gcagctccctccccgacccctgcccctgtcccaaccccggcccctgtttccatccaagcc
tccccctccatttcctcctcctcttcccctgtggcacttcctccattcttcatgcgaggc
tccatcatccagctggctgatggggagctgaagcgtgtggaggacctcaagacggaggac
ttcatccagagtgctgagattagcagtgagctgaagattgactccagcactgttgaacgt
attgacagtgggcaaactcccaatgctgtggtcatacagttttccgtgggagagctcaaa
gcccaggtgtgtgtagaggtgctggtggagtaccccttctttgtatttggtcagggctgg
tcgtcctgttgcccagaccggaccacccagctgtttgagctgtcctgtgctaagttgtgt
gtgggtgatgtgtgtgtgtcgttgaccctccgcgggttgaggaatggttcggtgacagac
agccaggctttggggactaagctgaagacgagtcacctctctgactcctgtcacaacgtg
gatgccactgtaagaaacagtatgagtccaaacgctgcaggcagtaatagtggcctccta
atgaaggcctccagcacagataggctggagagggagcaggtaactggacctggaccagga
ctagagctaccaccgggattgggagtagttccaggaccagtggaggggatctacggaagt
ggacaaatgctgacagccttggggactggagaagtaagacaggaatcagtgaaaacagac
atgcctgctcttaccaaaatacaatgtggtgatccagagagacccacagtccgcaagaga
cgttggtcagcgccagagagagaccagactgagagagctgaggaggagcctcctctgact
ctgcccaaaccctcttttgtccctcaggaggttaaaatcagcatagagggccactccagt
accgggagtgaaaggtgcttgaacaaaagagtagactgttga
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