Lates calcarifer (barramundi perch): 108898039
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Entry
108898039 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108898039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898039
03021 Transcription machinery [BR:
lcf03021
]
108898039
03036 Chromosome and associated proteins [BR:
lcf03036
]
108898039
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
ARID
108898039
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108898039
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108898039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108898039
NCBI-ProteinID:
XP_050934095
LinkDB
All DBs
Position
LG19:8850618..9019263
Genome browser
AA seq
2278 aa
AA seq
DB search
MAAQVASAPTRTNNKNKKLSSGLGPELNSGKSGGGGGGGTVQRTGPMLGAGDGTLNNVDH
HHRRNELNMVHSTSTTHNAPDGHDKDGNNLTSASASTNSTTSSMETGLIANHKLKCVGSG
DPPQSQPLPQQQPPPQFGQFAPHQQRQIQSNNTANNNGQGPRGDRGMDHQHHSGKENLLG
GQGEPQQQHMPGKGEGDLTCKPAERMTGTRYEHTNLGPTSNNSEFNNNYYTPRPCYEQHG
GQQQQSSGMGITHSSAHNSLENSHEAGFHNSQYNQYPGYRAGYGGGAYGMMGPSGCRQPG
NMMMGSNSSTSHGKSPLGAGSGSFQRFPGQTQQQHPSGATPTLNQLLTSPSPMMRGYGGA
YQDYSGPTAQQQAGMGLGKDVGPQYGAASTHGWGGQQRNHPHSMSPGNGGQGLGRTQVSS
MDFMAMKRSQLYGMANNPYSAPQQPGGGPYPPSQPYTSPPPHRYPMSMQGRGQMGIGGMQ
YPQQQQVAPYGQQGMGGYSQQQQQQQQQQTGQQGTPPYFSPPQQTPPGPTQSPYLQPRPP
PQQEVQQENYSTRGPAPGNSGKANNEDAVSQDRPSSLPDLSGSIDDLPTGTEAGLGSAVS
AGGSSSSSSSSQGEQGGXSNQGQSPFSPHASPHLPSQRSGPSPSPVGSPAGSTQSQQSRS
GSGPISPASGPSANTATPGSAMAPQSSGNGPDGAHPPITRSPMAQERGFMSNMQRNQAGS
QFASPQSGPSMSPHASPGGPLYPGMGPYSQGGPTGPYGPQGSQYGHQGNYPRPSNYSGTA
STGYSGPGPGMTNSLGMNASSPMHGQGPGQPIPVGRSHGPGSQNRVYPPMAPSSPSMPQP
AGPGMGPPSLGSSNRKAQEAAAAGIPGSANSTHNRQGSYQGPGISQASTMATTVPYSQPI
GNSSSATGNAQGPAYNLPPSGAMGMSGDSMVSPDGKPKTDVKDDTGPANEPHKPKLQDSY
SNNNSSSGSQQCVSQPATPGGALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKTPSSP
KANPNSSSLTGERITRLYELGVEPERRVWVERYLTFMEERGTPVAQLPAVGKKPLDLWKL
YMAVREIGGLAMVNKNKKWRELSTTLNVGTSSSSASSLKKQYIQYLFAYECKMERGEEPP
ADSSSSGSSMAGGDNRKQVKIQPPSPANSGGSLQGPQTPQSSGSSSTAEAAGDLKPPTPA
TTPLGQVTPLPPNRSSVSVQDPFSEVSDPAFQKRAASLPPSAPYQQGLSMPDMMMRMQYD
TKDPFAGMRKMAGADPYMPGQMPGGGMQDMYGRPPSALSMSQRSQYPYGPGYDRRPDHVM
GMEGSMGPPGSQNNLGPSNSDGSMYSPSRYPSQQRHDGYSQQYPGMPYGMHPSGMYPQQQ
GYKRPMDGMYGPPPKRHESDMYAMQYSNQQPDMYNHYGGGYSGPEHRAIQGQFPYPYPRD
RMAPSGQSQHSMMGGGPTPNHAADGPNMWPSRTDLGYPYPNRQGPPSQMPPYVSIGRDDM
DGRPGQEQWHRQSPYMSSSGGIPPLSSRQPSSYSNSPSMANHLPRAPSPGAFQRSLDSRM
SPSKIPFMSPMKMPKPGMAMMGSQGSGSLPQFPPNLRRDLNYPPGSIEATMPILKPRRKL
TSKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLSQLPGFLELIVEY
FRRCLIEIFGILEEFEVGTVAHKSCLDPANQKEEPIPDQENDSDVQPESESAPAVETQVE
RAVVVTEEAPPVTAEPESAVVNGEKEQSEASGKKEDKNKEDREKEEKEEEEESEKGAESK
KESMEQPVAELEPKPKQASKYDKLPIKIVHKEDLIEDMTEHLGYVTEFTSGLLHWQAGGG
DSTAHIQTHFEPHDSPPDRADEKKGKEDKQENKMEDGKKQPLKHITATIDDVLCARVDAL
SYAHPARSLPSYPFRVHPDGEQDHITLLEDEPRCLDEAPLSTTSPWQDSLSKRCLCVSNI
VRSLSFIPGNDSDMSRHPALVLLLGRLLLLRHQHPERNRSSPSYQRDEQQERGLSSSKEE
WWWECLSLLRENAMVTLANISGQLDLSTYSDTICLPILDGLLHWMVCPSAEAQDPFPSAA
PHSQLTPQRLVLECLCKLSIQDGNVDLLLATPPFSRQEKLFTVLVRYVGQRKAQVYREMA
VAVLSHLAQGDPTAARAIAMQKGSVGNLVGFLEDGVSMAQYQQNPHSLLHMGHPPMDPPS
INMMCRAAKGLLAMAKVEENKTEFVLYESRLLDISISSVLSTGVVAIVCQVLFHLGKL
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaactaataacaaaaataagaaattatcc
agcggtttgggtccggagctcaattcggggaaatccggaggaggcggaggaggagggacc
gtacagcgaactggaccgatgctgggtgccggagatgggactctgaataatgtagaccat
caccaccgccgaaacgagctcaacatggtccattcaacttccacgactcacaacgctccg
gacggccacgataaggatgggaataaccttacgtccgcctcggcgtcgactaattcaacc
acttcctcgatggaaacgggtttaatcgcgaaccacaagctgaaatgtgtggggagcgga
gatccccctcagtctcaaccgctgccgcagcagcagccgccgccgcaattcggccaattt
gcgccacatcagcagcgacagatccaaagtaataataccgccaataacaacggacagggg
ccccgtggggacagaggcatggatcaccaacaccacagcggcaaagagaacctgttgggg
ggtcagggggagccgcagcagcagcacatgcctgggaaaggtgagggggacctcacctgt
aaacccgcggagaggatgacgggtaccaggtatgaacacactaacttggggccaactagt
aacaactccgagtttaataataactattacactccaaggccctgttatgagcaacatggc
ggacagcagcaacaaagcagtgggatggggataacgcactcctcggcgcataacagcttg
gagaactcccacgaagcggggttccacaacagccagtacaaccagtacccggggtaccgg
gcgggctacggcggcggggcctacgggatgatgggcccctctggatgccggcaacctggg
aacatgatgatgggcagcaactcatcaacaagccacggcaagtctcccctgggagccggt
tcgggcagctttcagaggtttccgggacaaactcagcagcagcatccctcaggggccacc
ccgaccctcaaccagctgctgacgtcccccagtccgatgatgcggggttatggcggtgcc
tatcaagactacagtggtcccacggctcagcagcaagccggcatgggcctggggaaagac
gtggggccccagtatggagccgcatcgactcacggttggggaggacaacagagaaaccac
cctcattcaatgagcccgggcaacggggggcaaggcctcggtaggacgcaggtgtcctcc
atggacttcatggctatgaagcgctcgcagctgtacggcatggccaataatccctactcc
gctccacagcagccagggggcggtccttacccccccagccagccgtacacttcacccccg
ccacaccgatatccaatgagcatgcaagggaggggccaaatgggtataggcgggatgcag
taccctcaacagcagcaggtggcgccgtatggccagcaggggatggggggctacagccag
cagcagcaacagcaacagcagcagcagacggggcagcagggaacccctccgtacttcagc
ccccctcagcagacccctccaggcccgacccaaagcccctacctacagcctcgaccacca
ccacaacaggaggtccagcaggagaactacagcaccaggggtcctgctccagggaattct
gggaaggccaacaatgaagatgctgtctcccaggaccgcccctccagtctgccggatctg
tccggctcgatcgatgacctccccacggggactgaggccggtctgggctcagccgtcagc
gccggcggctcctccagcagcagcagcagcagccagggggagcagggaggcnncagcaac
cagggacagtcccccttctccccgcatgcctccccacatctccccagccagaggagcggg
ccctctccctcccctgttggctcgcctgcgggctccactcagtcccagcagtcccgatct
ggctctggacccatctctcccgccagtggaccctctgccaacaccgccactccaggttct
gccatggccccacagagctctgggaacggaccagatggagcccacccgccaatcacccgc
tcacctatggcccaggagagagggttcatgtccaacatgcagaggaaccaggctggctct
cagtttgcttctcctcagtccggaccttctatgtccccgcacgcttcacctgggggcccg
ctgtaccctgggatgggtccctactcacagggtggccccacaggcccttatggacctcaa
ggatctcaatatggacaccaaggcaactaccctcggccctccaactacagtgggacagcc
agcaccggttacagcggccctggccctggcatgaccaacagtctgggaatgaatgctagc
agccccatgcatggccaggggcccggccagcccatacctgtaggacgtagccacggccca
ggcagccagaacagggtgtacccgcctatggctcccagctcccctagcatgcctcagcca
gctgggccagggatgggccctccttctctgggtagctctaaccgcaaggcccaggaggca
gcagcagctggcataccaggatctgccaactcaacacacaaccggcagggcagctatcaa
ggccctggaatcagtcaggcgagcaccatggccaccactgtcccctacagccagccaata
ggcaacagcagctcagccactggtaacgcacaaggtccagcctacaatttgccaccttca
ggagccatgggaatgtcgggagacagcatggtaagcccagacgggaaacccaaaacggac
gtaaaagacgacacaggccccgccaacgagcctcacaaaccaaagctacaggacagctac
agcaacaataacagcagcagtggctcccagcagtgtgtgtcccagccagccacgccgggc
ggtgccctgcccgtaccctcccccctctcccccagcccggccagcctgtcttcttaccac
ggggacgacagcgacagcatcagcagccccccttggccactcaagaccccctccagtcct
aaagctaaccctaactcctcctccctcactggggagcgaatcacacgcctttatgagctg
ggtgtagagccggagaggcgggtctgggtagagcgatacctgacctttatggaggagagg
ggtacgcctgttgcccaactgcccgctgtgggcaagaagccactggatctctggaagctc
tacatggctgttcgggaaataggaggcctcgccatggtaaacaagaacaagaagtggcgt
gagttgtccaccaccctgaacgtcggcacatcaagcagctccgccagctccctcaagaag
cagtacatccagtatctgtttgcctatgagtgtaagatggagaggggagaagagccacca
gcagacagcagcagcagcggcagcagcatggctgggggagacaacaggaagcaggtcaag
atccagccaccctcacctgcaaattcaggcggctccctccaaggcccgcagactccccag
tcctctggcagtagctctacagcagaggcagcaggggatctgaaaccacccacacctgct
accacccctctgggacaggtcacaccactgccccccaacaggagtagtgtgagtgtgcag
gaccccttctcggaggtgagcgacccggccttccagaagcgtgctgcctccctgcccccc
tccgccccgtaccagcagggcctcagcatgcctgacatgatgatgaggatgcagtacgac
accaaggaccccttcgctgggatgaggaagatggcaggagctgatccctacatgccaggc
cagatgccaggtggtggtatgcaggacatgtatggtcgacccccatctgccctgagcatg
agccagaggtcacagtatccgtacgggccgggctatgacaggagaccagaccatgtgatg
gggatggaggggagcatgggtccccctgggagtcagaacaacctggggccttccaacagt
gatggcagcatgtactctcccagcagatacccttcacagcagagacacgatggctacagt
cagcagtatccaggcatgccgtatgggatgcatccatctgggatgtacccacagcagcag
ggctacaaacggcccatggatggtatgtatggccccccacccaagagacacgagagtgac
atgtatgccatgcagtacagcaaccagcagccagacatgtacaaccactacggtggtggg
tactcaggccctgaacacagagccatacagggacagttcccctacccctacccccgcgac
cgtatggccccctcaggacagagccagcacagtatgatgggtggggggcccactcccaac
cacgctgccgacggacccaacatgtggccatctagaacagaccttggctatccctacccc
aaccgacaggggccgccatctcagatgccgccttacgtctcgatcggtagagatgacatg
gacgggcggcccgggcaggagcagtggcaccgtcagtctccttacatgtcatcatcaggc
ggcattccacccctgtcttcacgccagccgtcgtcttattctaactccccgtccatggcc
aaccacctgcccagagcacccagcccaggggccttccagcgctccttggactcacggatg
tcgcccagcaaaataccgttcatgtcacccatgaagatgcctaagcctgggatggccatg
atgggctcacagggcagtggatccctgcctcagtttcctcccaacctgaggagggacctc
aactacccaccaggatcaatcgaggccaccatgcccatcctcaagcctcgacgcaagctt
acctccaaggacactggaacgcctgaggcctggcgtgtcatgatgtctctgaagtctggc
ctgctggcagagagcacatgggctctagacactatcaacatcctgctgtacgatgacagc
actgtggcctcctttaacctctcccagttgcctggattcctcgagctcatcgtggagtac
ttccgccgttgtctgatcgagatctttggcatcctggaggagtttgaggtggggactgta
gctcataaaagctgtctagatcctgctaatcagaaagaagaacccatccccgaccaggaa
aacgactctgatgtccagccggagtcagagtcagccccggcagtcgagacgcaagtggaa
cgagcagtagtcgtcacggaggaggctccacccgtcactgcagagccagagtcagctgtg
gtgaacggtgagaaggagcagtccgaggcgagcggaaagaaggaggacaaaaataaagag
gacagagagaaagaggagaaagaggaagaagaagagagtgaaaaaggagcagagagtaaa
aaggagtctatggagcagccagttgcagagctagagcctaaacctaaacaagccagcaag
tacgacaagctcccaatcaagatcgtccacaaagaggacctgattgaggacatgacagag
cacttaggttacgtcactgaattcaccagtgggctgctacactggcaggctggtggaggt
gactccaccgcacacattcagacacactttgaaccccatgactcgccacctgacagggcg
gacgagaagaaagggaaagaagacaaacaggagaacaagatggaggatgggaagaaacaa
ccactgaaacacatcactgccactattgatgatgttttgtgtgctcgggtcgacgccctc
tcttacgcccaccctgcacgctccttgccatcctaccccttcagggtgcacccagacggg
gagcaggaccacatcaccttgctggaggacgagccgcgatgcctggacgaggctccactc
tccacaacctccccctggcaggactcgttgtccaagcggtgcctctgtgtctccaacatc
gtccggagcctgtccttcatcccggggaacgactcggacatgtcgcgccacccggccctg
gttcttcttctgggcaggctgctcctgctgcgccaccaacacccggagaggaacaggtcg
tcccctagctaccagagagatgaacaacaggagcgggggctgtcgagtagcaaagaggag
tggtggtgggagtgtctgagtctgctcagggagaacgccatggtcacactggctaacatc
tccggccagctggatctctccacctattcagacactatctgcctccccatcctggatggc
cttctccactggatggtgtgcccctcagctgaagcccaggaccccttcccatcagcagcg
ccccactcccagctcacgcctcagaggctggtcctggagtgcctctgcaagctgagcatc
caggacggcaacgtcgacctcctgctagctacgccacctttcagccggcaggagaaactc
ttcactgtcttggtccgttacgtgggtcagaggaaggcgcaggtgtacagagagatggcc
gtggccgtcctctcccatctggcacaaggggaccccacagcggcacgtgccatagccatg
cagaagggcagcgtgggtaatttggtaggtttcttggaggatggcgttagcatggcgcaa
taccagcagaaccctcacagcttactgcacatggggcatccccctatggacccgccgagc
ataaacatgatgtgcagagctgctaaaggcctgttggccatggctaaagtggaggagaac
aagacagagtttgtgctgtacgaaagcagattattagacatctccatttcctctgttctc
agcacaggagtggtggccattgtttgccaagttctctttcacttagggaaattatga
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integrated database retrieval system
