KEGG   Latimeria chalumnae (coelacanth): 102361123Help
Entry
102361123         CDS       T02913                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  
histone deacetylase 6 [EC:3.5.1.98]
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
Enzymes [BR:lcm01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102361123 (HDAC6)
Protein phosphatases and associated proteins [BR:lcm01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102361123 (HDAC6)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102361123 (HDAC6)
Chromosome [BR:lcm03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     102361123 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
Un
AA seq 1204 aa AA seqDB search
MSAESPGSVISGRLLQPPGSGRRDWVGRRAGCHCKRSFAIMTSVPEQSSQRSLRASSRSP
RSTDSDTAKKGGRKEGQQKSGRQSLQEAKRKGRMEQNRGEGDIASQLSQLDLSTDAVVTG
TALVYDERLTEFYCLWDKSFHECPERVTTVMETIRQHGLLQRCVSVETRAASEEELLLVH
SPEFLELMKSSESMTEEEMKALSDRFDAVFLHPKSYSCACLAAGAVLQLVDQVMSAQVRN
GLAVIRPPGHHAQRDKMSRFCMFNNVAIAANYAKQKHGLERILIVDWDSHHGQGIQYIFE
DDPSVLYFSIHQYKHAELWPHLPESNWSAVGKGKGEGFNINIPWNQAGMRDADYITAFLQ
VLLPVAFEFRPQLVLVAAGYDCAVGDPLGEMAVSPACFAHLTHMLMPLANGNLILAFEGG
YNRRATAEGVCASLKILLGNPCPHLLPPFTPSQSALESISATIAAHVKYWKSLQNDALLL
SELKTEDAQPSTVEADEVINWSVEQVMRALPAQRTGLVYDEKMKEHYNMWDSCHPEFPQR
ILMIYNRHVELQLVKRCHPIPSRCATEEELQMCHSTEHISTIKSSVDMKPRDLHRLSNEY
NSIYICPKSYECALLATGSTFNVVEAVVTGKVQNGVAIVRPPGHHAEKGAACGFCFFNTV
ALAARFAQKLSGRKMKVMILDWDVHHGNGTQHMFEDDPSVLYVSLHRYDNGGFFPALEDA
NYNRVGCGDGEGFNVNVPWNGGRMGDPEYMAALQKVVMPVAYEFAPELVLVSAGFDAARG
DPLGGYLVTPECYAHMTHRLLGLAGGKVVVVLEGGYNLTSISESMSMCTRTLLGDALPDM
GTLKPPSPGALLSIRNVLKSHRRYWRSLQLNVQEFVKEEAEAPASPSGEVDVPSQASSSV
KGQRSPQASPAPAVEDSVEGPLPEGKRELDMTEAETGNSERSACMGEIIKGMESVCLSSF
GDENQQKSKEECSTGPPLATYPSPSSIPVGGARQKVKPASGSPESMVTDRKEGRLELLQG
ESSESKAALVSETAGMKDRTDRGKAAKSDGASTDGTGQAEGKLGEATGWSNPLSSRSISE
IFGISPSMEPKTFYAVEPLAWCPHLETVCPVPASGLNVFQACAECGSETENWVCLVCYQV
LCGRYVNEHMLMHSVNLGHLLVLSYADLSVWCYGCEAYIHNQVLFEAKNTAHRMKFGEDV
PGLH
NT seq 3615 nt NT seq  +upstreamnt  +downstreamnt
atgtcagcagagagccctgggtccgtcatcagcgggcgcctgctgcagcctcccggaagt
ggaaggagggactgggttgggcggagggcaggttgtcattgtaagaggagttttgccatc
atgacctcggtcccagaacagagcagtcagcggtccctgcgagccagctcccgatctccc
cgctccacagactctgataccgcgaagaagggtggaaggaaagaagggcagcagaagtcc
gggcgtcagagcctgcaggaggccaagaggaaaggcaggatggagcagaaccgcggtgaa
ggggacattgcatcccagctcagtcaactggatctgagtactgatgctgttgtgacgggg
actgcgctggtgtatgatgagagactgacagagttctactgcctctgggataagagtttc
catgagtgtccggagcgggtgacaactgtgatggagacgatacgtcagcacgggttgctg
cagcgctgtgtttccgtggagacacgggccgcttccgaagaggaactcctgttagttcac
agcccagaattcttagagctgatgaagtcctcggagagcatgactgaagaggagatgaag
gccctttcagatcgctttgatgctgtcttccttcatcctaaatcgtacagctgtgcctgt
ctggcagccggggcggtcctacagctcgtagatcaggtgatgtcggcacaagtccgcaac
ggtctggcagtgatcaggcctccgggacaccacgctcagcgggacaagatgagcagattc
tgcatgttcaacaacgtcgccatcgcagccaactatgcaaagcagaagcacggccttgaa
aggatcctgattgtagactgggatagtcaccacggacaagggatacagtacatctttgag
gatgatcccagtgtgttgtatttttccatacaccagtacaaacatgcagaactttggcct
catcttcctgagtcaaactggtcagcagtgggaaaggggaaaggagagggattcaacatc
aacataccttggaatcaggctggaatgagagatgccgattatattacagccttcctgcag
gttttgttacccgtggcctttgagtttcggcctcagcttgtccttgtcgctgctggatat
gattgtgctgtgggtgacccgttgggcgaaatggcggtttcaccagcgtgttttgctcat
ctgacacatatgttgatgcccttggccaacggaaacctaattctggcttttgagggtgga
tataaccgcagagccactgcagagggagtctgtgcatcattgaagatcttgctcggtaac
ccctgcccgcacctgcttcctcccttcactccaagtcaaagtgccttagaatccatttct
gccactattgctgcccacgttaagtactggaagagccttcagaatgatgcgttgttactc
agcgaattgaagaccgaggatgcccagcccagcactgtggaagccgacgaagttatcaat
tggagcgtggagcaggtgatgagggcgcttcccgctcagcggacggggctggtgtatgac
gaaaagatgaaggagcattacaacatgtgggacagctgtcaccctgaatttccgcaacgg
atattgatgatctataaccggcatgttgagcttcagttagtgaagcgctgtcatccaatc
ccatctcgctgtgccacggaggaggagctacagatgtgccacagtacagagcacatcagc
accataaaatcctcagtggatatgaaaccacgggatctccatcgcctgagcaacgagtac
aactccatttacatctgccccaagtcctacgagtgtgccctgctggccacgggttccacc
ttcaacgtggtggaagcagtcgttacggggaaggtgcagaacggggttgccatcgtccgt
cccccggggcatcacgcggagaaaggcgctgcctgtgggttctgcttcttcaacacggtc
gccctggcagcgaggttcgctcagaaactctcggggagaaaaatgaaggtgatgattttg
gattgggacgttcaccatggaaacggcacgcagcacatgtttgaggacgatccgagtgtg
ctgtatgtgtccctccatcgctatgacaacggcggcttctttcccgcactggaggatgcg
aactacaatcgagtcgggtgcggcgatggggaagggtttaatgtcaacgttccgtggaat
ggcggtcggatgggggatccggagtatatggccgccctacagaaggtggtgatgccagtc
gcttacgagtttgctcctgaactggttttggtgtctgcgggattcgacgccgcccggggt
gacccgctggggggttacctggtaaccccagaatgctacgctcacatgacccacaggctg
ctgggactggcaggagggaaggtggtggtggtgttggagggagggtacaacctgacctcc
atctcggagtcgatgtccatgtgcacgcggacgctcctcggggacgcgctgccggacatg
gggaccctgaagccgcccagccccggagctctgctgtctattcggaatgttctgaagagc
cacaggaggtactggaggagtctgcagctgaacgttcaagagtttgtgaaggaagaagcc
gaagcccctgcctcaccatcgggcgaggttgatgtaccttctcaggcaagctcgagcgtc
aaaggccaaaggtcaccccaggcatcgccagcaccagctgtggaagacagtgtggaaggg
cccctccctgaagggaaaagagagctggatatgactgaggcagagacaggcaactctgaa
aggtcagcatgtatgggggagataataaaggggatggaatctgtctgcctcagcagtttc
ggagacgagaaccagcagaagagcaaggaggaatgttccacaggcccgcccctggcaacc
tatccgagtcccagctccatccctgtgggcggagccaggcagaaagtaaagcctgcctcc
ggctcccccgaaagcatggtgacagacaggaaggaaggaaggttggaattgctccaaggg
gagagttcagagagcaaggctgccctggtatcagagacggcaggaatgaaagacaggaca
gacagaggcaaggcagcgaaatcagacggcgcttcaactgatggcacaggccaggccgag
gggaaactaggtgaagccacaggctggtctaacccactgagctctcgttccatctctgag
atctttggaataagccctagcatggaaccgaaaacattttacgcagtggaaccgttggca
tggtgcccccacctggagacggtgtgcccagtgcccgcatccggcctgaacgtgttccag
gcctgcgcagagtgcggcagcgagacggagaattgggtctgcctagtctgttaccaggta
ctttgtggccgctacgtgaacgagcacatgttaatgcacagtgtgaacttgggacatctc
ttggtactgagctatgctgacctttccgtctggtgctatggctgtgaggcctacatccac
aaccaggttttatttgaagctaagaatactgctcacagaatgaagtttggggaagacgta
ccaggactacactga

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