Larimichthys crocea (large yellow croaker): 104924507
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Entry
104924507 CDS
T04659
Name
(RefSeq) collagen alpha-1(XXVII) chain A
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104924507
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104924507
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104924507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104924507
NCBI-ProteinID:
XP_010736174
LinkDB
All DBs
Position
IX:complement(2372768..2438344)
Genome browser
AA seq
1768 aa
AA seq
DB search
MNLGTRRRDCRTSHLDTKRALLLCTVLYCTCYLGLTQVHSEDVDILQKLGLKGEKPSRSV
PAGVIPFRSGIILNQRAHIETPLRSLFPAAIWPNLALVLSVRSHRVNSAFLFSLLSGRKK
LLLGLQLTPGNLVLHTGPNTSVALPYEPHDGQWHQLAVGINGQRVTLYASCGEQSVHADF
GWDSEEGLAPELQGSFLLGRANQQHASAHFEGAICQFDLVPSAQAAHNYCRYIKKQCREA
DTYRPNLSPLLPILPRETNITATAATPKRGGPETVKKTTRLSLAKSVAAAASAVRYVAST
QTIKPSHGTIPTPLLGTVMPVTVQLGLASPPPKARTETVTAPLRTKVAPTKAPSSRPSTS
KASNQKTSKPTPTKPIPNNTSKKTITGTDKKKPTIPATTSTKPTKPTKTKSDSALSDQGV
VPKKPQPTTTKKTSPKPKATPSKATPSKAKTNSVKAVPSKPTISKVKPSKPTSSKTTTVK
TTKPVSKQVTKPTKQTKTTKAPVTPRPTRLSYNPVTPPATDGFQSWDVPPTLFSLLDGPI
GQKGEAGPSGLPGPPGKPGLPGKRGPRGAPGPHGNPGRPGPPGLKGKKGDPGMSPGPAPK
GEKGDSGIIGPVGLTGQEGRKGQRGYPGPPGLPGEPGEQGPVGSPGAKGYPGRQGLPGPI
GPIGPKGVRGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGFPGDFGERGPPGPDGEP
GDMGAPGPNGVLGLIGDMGPVGEMGLPGPIGLKGVPGNPGEPGLKGDKGEVGIPGEQGEL
GYKGDKGIQGAPGLPGIRGKPGPQGKIGEIGPDGAPGPPGPEGFPGDMGPPGENGLEGPK
GKLGARGLPGPRGVPGLEGDEGPIGPPGPTGLEGRMGRKGFPGMVGPEGVKGELGIAGNV
GPMGERGLVGFIGPVGEAGLAGEKGDRGEMGLPGPPGEKGSTGHPGTPGETGPTGPPGRP
GPAGATGPAGTRGSKGLRGAIGPDGPTGEMGLEGKPGSEGPPGKIGFPGPQGKIGEPGET
GPKGFPGIQGPSGPPGDKGIAGEPGPPGPPGTVGLLGEIGQKGPPGNVGEPGLPGEPGEK
GAIGSLGNIGEQGLIGQRGEPGLEGEAGSAGPDGTKGEKGDMGQEGETGEKGETGLKGKE
GPPGSPGLTGVRGPEGKPGKIGERGKIGSKGAKGHQGHLGETGPVGKTGPPGFVGQKGSR
GTIGHVGAPGRMGQQGEPGIAGYEGHQGSQGPMGAPGPKGEKGEQGDDGKVEGPPGPPGD
TGPQGDRGERGESGDPGYKGQVGVDGERGRSGAPGQPGQPGPHGQQGPKGAKGDHGQKGK
KGQSGQKGTRGLEGGIGLPGPRGVVGREGQEGVPGVDGVPGKDGSKGMPGEHGDDGAFGL
PGKAGSRGKTGVPGLPGDQGSIGPKGEQGLRGQNGSQGKRGFKGGMGLPGTQGDQGPKGQ
PGDPGESGFPGILGVFGPRGPPGDFGPKGIRGPKGPQGTMGRGGPVGPIGIIGPNGSAGP
RGEKGNRGETGLQGPRGSPGPRGPPGLPGRPGIPLSFKEDGLLFMDSHTPLRTENKPVMD
LPMLDQGAEIFKTLHYLSNLIQSLKNPLGTRDNPARICRDLHSCEQKLNDGTYWIDPNLG
CSSDTIEVSCNFTGGGQTCLKPITASKPTISVGRVQLNFLHLLSSEAVQHIVIHCLNISV
WRSAEDRPAAQGSVKFKAWSGEVFEVGGELEPEVLEDSCWIKDGRWHQTHFVFHSLDPSL
LPVVDIYNLPGTTPGSHYHLEVGPVCFL
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggcacccgaaggagagattgcagaacctctcatctagacacaaagagagcc
ctattgctctgtacagttttatattgtacctgttacctgggacttacacaagtacactct
gaagatgtggacatcctccaaaagttggggctcaagggagagaaaccgtcacgctcggtg
ccagcaggggttattccattcagatcagggatcatcctcaaccagcgggcgcacatcgaa
actccattgcgctcactcttcccagcggccatctggcccaacctggcactggtcctgagt
gtgcgctcacaccgtgtcaacagcgctttcctcttctccctgctctcaggccgcaagaag
ctccttcttggtctgcagcttacaccgggcaacctggtccttcacacaggaccaaacacc
tcggtggcattgccctatgagccccatgatggtcaatggcaccagctggcggtgggaatt
aatggacagagagtgactctatatgcctcctgcggagagcagagtgttcatgcagacttt
gggtgggacagtgaggagggactggctccagagctccagggctccttcctgctggggcgg
gcaaaccagcagcatgcctcagcacactttgaaggagcaatctgtcagtttgacctggtc
ccttctgcacaggcagctcacaactactgcaggtacattaagaaacagtgcagggaagct
gacacatacaggcctaacctttctcccttgttgcctatcctaccacgagaaacgaacatc
acagctaccgctgctacccctaaacgtggtggccctgaaacagtcaagaagaccacgcgg
ctgagccttgccaagagcgttgccgctgctgcctcggctgtcagatatgtggcctccacc
caaacaataaagcccagccatgggaccattcctacacccctgctgggaactgtgatgcca
gttacagtccagcttggtttggcctcaccgcctcccaaggccaggactgaaactgtcaca
gcaccactcaggacaaaagtagccccgacaaaagcaccaagctcaagaccctccacctct
aaagcttcaaatcagaaaacctccaaacccactcccacaaagcccattccaaataacacc
tccaaaaagacgatcacaggaacagacaagaagaaacctactattccagccactacaagc
accaaacccaccaagcccaccaagacaaagtctgactctgcgttatcagaccaaggtgta
gtcccaaagaaaccacaacccaccacaaccaagaaaacatctcctaagcctaaagccaca
ccatccaaagccactccgtccaaagccaaaacaaattccgtcaaagctgtcccttcaaaa
ccaacgatatccaaagtcaagccatcaaaaccaacaagttccaaaactacaactgttaaa
accaccaagccagtctccaaacaggtcacaaaaccaacgaagcaaaccaaaaccaccaag
gctccagtcactccacgaccaaccagactttcgtacaacccagtaacaccacctgctact
gatggcttccagagctgggacgtgccaccgactctgttctccctgctggatggacctata
ggacagaaaggagaagcaggcccatcgggactgccaggacctccagggaagccaggcctg
ccaggcaagaggggtccacggggcgcccctggtccccatggaaaccctggccgacctggt
ccacccgggctcaaggggaaaaaaggagaccctggcatgtcacctgggcctgcacctaaa
ggagagaagggagactcagggattattggcccggttggactgactggccaagaaggtcgg
aagggacagagaggttaccctggtccacctggactccctggagagcctggagagcaaggt
ccagtcggaagcccaggtgccaaaggttatcctggcaggcagggtttaccagggcctatc
ggaccaatagggcctaaaggcgttcggggtttcattggaatcccgggactttttggcctt
cctgggcctgatggcgaaagaggcattcccggcgaaccagggaagaggggcaagatgggt
aggccggggtttccaggggactttggggagagaggaccacctggaccagatggagagcca
ggtgacatgggagcccccggtccaaacggagtccttggacttattggtgatatgggacca
gtgggagagatgggccttccaggacctattggactgaagggggtgcccggaaatccagga
gaaccaggactgaaaggtgataagggtgaagttgggattcctggagaacaaggggagctc
gggtacaaaggagacaagggcatccaaggtgctccagggttaccaggcatccgtgggaaa
ccaggaccacagggcaagatcggcgagataggacctgatggcgcacctggaccaccaggc
cccgagggtttccctggtgacatgggaccaccgggagagaacggccttgaaggaccaaag
ggaaagctaggggccagaggtttaccggggccacgaggggtgcctggcttggagggagat
gagggcccgatcggaccaccaggcccaacaggactcgagggtagaatgggcagaaaagga
tttcctgggatggttgggccagagggagttaagggagagctcggtattgcaggaaatgtt
ggacccatgggagaaagaggcttggtgggtttcatcggacctgtgggagaggcaggactg
gcgggggagaagggtgatcgaggagagatgggccttcccggaccacctggagaaaaggga
tcgacgggtcacccagggacaccaggtgaaaccgggcctacaggaccaccaggaagacca
ggccctgctggagcgactggaccagccggtaccagaggatccaagggcttacggggagcg
atcgggcctgacggtccaacaggagagatggggttagagggcaagccgggttctgaaggt
cctccaggaaaaataggtttccctggaccacaggggaagatcggagagccgggagaaact
gggcctaaaggttttcctggtatacaaggaccctcaggaccgccaggggacaagggaata
gcaggcgagccgggaccacctgggccaccagggactgtgggactgttgggtgaaattggt
caaaagggtcctccaggcaacgtgggagaaccaggattgccaggcgagccaggggagaag
ggagccattggatctcttgggaacatcggagagcaaggactaataggacagcggggagag
ccaggcttagagggagaagctggttcagctggtccagatggaaccaagggtgaaaaaggc
gacatgggtcaggagggtgaaacaggagaaaaaggtgaaactgggctaaagggaaaggag
ggcccacctggaagtcctggactcactggcgtcagaggtcctgaagggaaacctggcaaa
attggggaaagaggcaaaataggttcaaagggtgccaaaggtcatcaaggtcacctcggg
gagactgggccggtggggaagactggtccaccaggttttgttgggcagaaggggtccaga
ggaacaatcggacacgtgggagctcctggtcgaatgggtcaacagggggaacctggtatt
gcaggttacgagggtcatcagggatcacagggccccatgggggctccaggaccaaaaggt
gaaaagggcgagcagggagatgatgggaaagtagagggtcctcctggtcctccaggtgac
acaggtcctcaaggtgacagaggagagagaggggaatcaggagatccaggttacaaaggt
caagttggtgtggatggagagagaggcagatctggagctcctggacaacctggacaacct
ggacctcatgggcaacaaggacccaaaggggccaaaggagatcatggtcagaaaggcaaa
aagggtcagtctggacaaaaaggaaccagaggattagagggtgggattggtcttcctggt
cccagaggtgtggtgggccgagagggacaggagggagtgcccggggtggatggagtccca
ggaaaggatggcagtaaaggcatgccgggagaacatggtgacgacggggcgtttggtctt
cctggcaaagctggctcacgtggtaaaactggcgttccaggactcccaggagatcaaggg
agcattggaccaaagggtgagcagggtcttcgaggccagaatggatctcaagggaaaaga
ggtttcaaaggtggaatgggactaccagggacacagggagaccaaggacctaaaggacaa
cctggtgatcctggggaatcaggatttccaggaattctgggagtttttggaccaaggggg
cctccgggagactttgggccaaagggcatacggggaccaaaggggccacagggtacgatg
ggcagaggaggacctgttggccctataggaattatcggccccaatggaagcgcaggtccc
agaggagagaagggcaatcgcggagagactggattgcaaggaccaaggggatctcctgga
cctcgtggaccgcctggacttccaggtcgcccgggtatccctctatcatttaaagaagat
ggacttttgtttatggattcacacaccccactcaggactgagaataagccagtgatggac
ctgccgatgctggaccagggtgcagagatctttaagaccctccactacctcagtaacctg
atccagagcctgaagaacccactgggcactcgggacaaccccgcccgcatctgcagggac
ctgcacagctgtgaacagaagttaaatgatggcacttattggattgaccccaacctgggc
tgctcgtcagatacaatagaagtctcctgcaactttaccggaggcggacagacttgcctg
aaaccaataacagcatccaagccaacaatcagcgtcggtcgtgtccagttgaacttcctg
catctgctgagctcagaggcggtgcagcacatcgtcatccactgcctgaacatttcggtt
tggaggtcagctgaggatcggcctgctgcccaggggtctgtgaaattcaaagcctggagt
ggtgaagtgttcgaggtgggaggagagctcgagccagaagtcctggaagactcctgctgg
ataaaagatggccgctggcaccagacccattttgtgttccactccctggacccttccctg
ctccctgtggttgacatctacaatctccctggtactacccctggctcacattaccaccta
gaagtaggtcctgtttgcttcctgtga
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