KEGG   Larimichthys crocea (large yellow croaker): 104926552Help
Entry
104926552         CDS       T04659                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03030  DNA replication
lco03410  Base excision repair
lco03420  Nucleotide excision repair
lco03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lco00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    104926552 (lig1)
   03410 Base excision repair
    104926552 (lig1)
   03420 Nucleotide excision repair
    104926552 (lig1)
   03430 Mismatch repair
    104926552 (lig1)
Enzymes [BR:lco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104926552 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     104926552 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     104926552 (lig1)
DNA replication proteins [BR:lco03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    104926552 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     104926552 (lig1)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     104926552 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     104926552 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     104926552 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 104926552
NCBI-ProteinID: XP_019120449
LinkDB All DBs
Position
Un
AA seq 1020 aa AA seqDB search
MQRSIASFFQPKNKDNNIQKKSADAPVKKPAKSPLKVQNGVQEPDSPIKKVAKRSRQILD
SDDDEAPPAVKEQVATKGQGDKEAGGKAEKKDDVFKAVPTPLSPPPAPATPVTPATPATP
ASSASPGTPSTPNSISPSGIVKRKTARKTFPKRKLNESMSGSESQKDEAEAKEAQGQQKK
RPRVESGGSSPGNPGEPMEEGAKEEAVEKAVTEANGPDEEVESEKKEEGEKTRDDEEEEE
EEEEEQVERKGSDEKEKKSEGAMKKNEAKEKTDDEKGPAVAKEEVVEKDTREGEESPKSQ
TARKQKEAKEQKDKEPPKKAPISSFFAPRKAVVKTEKPEKSEGEKKTSAERKTSAEDSKD
TKGESGQTDYNPARPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLF
RSVLLLSPDDLLCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEK
GDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIAGMSGNSAMNKKIDIIKGLFVACRF
SEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQEFPPAVIDAGKGMSTESRRAWI
EEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMK
RFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTTKYPDIISRIPKVKKDSVVSC
VLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLC
RRRALLKESFSEVEGEFVFARSIDSDNTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIA
KRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKI
GTGFKDEDLEQHYKFLKEHILPKPRAYYRVEQSAEPDVWLDAVQVWEVKCADLSLSPIYK
AGMGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADLEDYY
NT seq 3063 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagaacaaggacaacaacatccagaag
aaaagtgcagatgcaccagtgaagaagcctgccaaaagccccctcaaggtgcagaacggc
gtccaggaacccgattcgcccatcaagaaggtcgcgaaacgcagccgtcagattctggac
agcgacgacgacgaggcgccgccggcagttaaagaacaagttgccaccaaggggcaggga
gacaaagaggctggcggcaaagcggagaagaaggacgatgtgtttaaggcagttcccacc
ccgctgtctcctcctccagccccggccacccctgtaacgcccgccactccggccaccccg
gcctcttcggcttcacctgggacccccagcaccccgaactccatctccccgtctgggatt
gttaaacgcaagaccgcgaggaagacgttcccgaagaggaagctcaacgagagcatgagc
ggcagcgagagtcagaaggatgaggccgaggccaaggaggcgcagggtcagcaaaagaaa
cgaccccgtgtggagagcggcggcagcagcccagggaaccccggtgaacccatggaggag
ggagcaaaggaagaagcagttgaaaaggctgtgaccgaggccaacggcccagatgaggag
gtggagagcgagaagaaagaggaaggcgagaagaccagggatgatgaggaggaggaggag
gaggaggaggaggagcaggtggagagaaagggctctgatgagaaagaaaagaaatctgag
ggggcgatgaagaagaatgaagcaaaggagaagacggatgatgagaaagggcctgctgtt
gccaaagaggaggtggttgaaaaggacacgcgcgaaggagaagagagcccaaaaagtcaa
acggcgagaaagcagaaagaagcaaaagagcagaaagataaggagccgcccaagaaagcg
cccatcagcagtttctttgctcccaggaaagctgtagtgaagacagagaaaccagagaaa
agtgaaggcgagaaaaagacgagtgcagagaggaaaacttcagcggaggacagcaaagac
accaaaggtgagtcaggacaaacagactacaatccagccaggcccaactaccatcctgtg
gaccatgcctgctggaagcagggccaaaaagtgccgtacttggctgtggctcgcaccttt
gagaagattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaacctgttt
cgctccgtgctgctgctctctccagatgacctgctgtgctgtgtgtatctatgtttgaac
cagctgggtcctgcccacctggggatggagcttggcgttggcgagacggtgctgatgaaa
gctgttgctcaagcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaa
ggcgatctgggcctcgtggcggagagttcccgtagcaaccagcgcatgatgttccaaccg
gccagtctgacagcagggggcgtgttcaggaaattgaaggaaattgccggcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatagtcaggtccctggctgggaagctgaggataggcctggctgag
cagagtgtcctatcagcactgagccaggctgtgtgtctgaccccccctggacaagagttc
cctccagctgtgatcgacgcggggaaagggatgagcacggagagcaggcgggcctggatt
gaagaaaagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctc
atcccggttctgctgaaagagggcatagacgagctacccaatcactgcaagctcactcca
ggcgtgccgctgaggcccatgttggctcacccgaccaagggtgtcggcgaggtgatgaag
aggttcgatgaggcggcgttcacctgcgagtacaaatacgacggagagcgtgcacagatt
cacattctggagagcggcgaggttcgaatattcagccgcaaccaggaagacaacaccacc
aaatacccagatatcatctctcgcattcccaaggtgaagaaggactctgtggtgtcctgc
gtcctggacgcggaggccgtggcctgggatcgcgagaagaaacagatccagcccttccag
gtcctcaccactcgtaagagaaaggatgtggatgcctcggagatcaaagtccaagtgtgc
gtgtacgcctttgacctcctctatctcaacggcgagtccctggtgcgacagccgttgtgt
cggcgtcgggctctgctgaaagaaagcttctcagaggtggagggagagtttgtgttcgcc
cgatccatcgactccgacaacaccgagaccatcgccgagttcctggagcagtctgtccga
gactcctgcgagggcctaatggtgaagactctggagaaggacgccacctatgaaatcgcc
aagcgctctcataactggttgaagctgaagaaagactacctggagggcgtgggcgacacg
gtggacctgtgcgtgattggcgcctacctgggaaaaggcaagaggacgggcacctatgga
ggcttcctgctggcctgctacgacgaggacaacgaggagttccagtccgtctgcaagatc
gggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacatt
ctgccaaagccccgcgcctactaccgcgtggaacagtcggcggagcccgacgtgtggctg
gacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcacccatctacaag
gccggcatgggaatggtggatccagaaaagggcatttctctgaggttcccccgcttcctt
cggatcagagacgacaagaagcccgaggacgccacgactggtgctcagatcgctgatttg
tacaagaagcagcagcagattcagaaccagggggagaaagccgacctagaggactactac
tga

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